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Report for CCDS23434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23434.1 Public Mus musculus 9 Armc8 23 108 98 CCDS HistoryNCBI Gene:74125Re-query CCDS DB by CCDS ID:23434.1Re-query CCDS DB by GeneID:74125See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23434.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035043.11 ENSMUSP00000035043.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035043.11Link to Ensembl Protein Viewer:ENSMUSP00000035043.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035043Re-query CCDS DB by Protein ID:ENSMUSP00000035043
Original member Current member NCBI NM_028768.3 NP_083044.2 Accepted alive Link to Nucleotide Sequence:NM_028768.3Link to Protein Sequence:NP_083044.2Re-query CCDS DB by Nucleotide ID:NM_028768Re-query CCDS DB by Protein ID:NP_083044Link to BLAST:NP_083044.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083044.2 673 Q9DBR3-1 673 99.7028% 0 2

Chromosomal Locations for CCDS 23434.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 99480744 99480777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99483100 99483193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99483966 99484038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99487864 99487959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99496151 99496246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99497243 99497392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99499293 99499385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99502512 99502598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99505265 99505346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99505650 99505732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99520487 99520582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99523139 99523339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99525353 99525413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99526891 99526981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99527079 99527154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99529331 99529411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99533098 99533190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99535795 99535892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99536163 99536305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99537688 99537759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99551543 99551619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99568602 99568646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2022 nt):
ATGGCGTGCCTGTTGGAGACCCCAATCCGCATGAGCGTCCTCTCGGAGGTAACAGCTAGCAGTCGCCACT
ATGTTGACAGGCTATTTGACCCTGATCCCCAGAAAGTTCTCCAAGGTGTCATAGACATGAAAAATGCTGT
AATTGGAAACAATAAACAGAAAGCCAACCTCATCGTTCTAGGAGCGGTTCCAAGATTGTTGTATTTGCTT
CAACAAGAAACCTCAAGTACAGAGCTGAAAACTGAATGTGCAGTGGTGTTAGGGAGTCTTGCGATGGGCA
CAGAAAACAATGTCAAGTCTCTACTAGACTGCCATATTATCCCTGCCTTACTACAAGGACTACTGTCCCC
AGACCTGAAGTTCATTGAAGCTTGCCTCCGATGCCTCCGGACAATCTTCACCAGCCCTGTCACTCCAGAG
GAGCTACTGTATACAGATGCTACGGTGATACCACACCTCATGGCACTGCTGAGCAGGTCCCGCTACACCC
AGGAGTATATCTGCCAGATCTTCTCACACTGTTGCAAAGGGCCAGATCATCAAACAATTTTGTTTAACCA
TGGGGCAGTGCAGAACATTGCTCATCTCCTAACCTCACCCTCTTACAAAGTTCGAATGCAAGCACTGAAA
TGCTTCTCTGTTTTAGCCTTTGAGAATCCCCAAGTATCGATGACCCTGGTAAACGTTTTGGTTGATGGGG
AGTTGTTACCACAGATATTTGTGAAGATGTTACAGAGGGATAAGCCTATTGAGATGCAGCTCACGTCAGC
AAAATGTTTAACTTACATGTGCAGAGCTGGAGCAATTCGCACAGATGACAGCTGTATTGTATTAAAAACT
TTGCCTTGTTTGGTTCGAATGTGCAGTAAGGAGAGGTTACTAGAGGAGAGAGTTGAAGGAGCTGAGACCC
TCGCCTATCTGATTGAGCCAGATGTTGAGCTGCAGAGAATCGCTAGCATAACCGACCACCTCATTGCCAT
GCTGGCTGACTATTTCAAGTATCCCAGCTCAGTGAGCGCCATCACTGACATTAAAAGGCTTGATCATGAC
TTAAAACATGCCCATGAGCTCCGCCAGGCTGCGTTCAAGCTCTATGCCTCTCTTGGAGCAAATGATGAAG
ACATCCGGAAGAAGATCATTGAGACTGAAACTATGATGGACCGAATTGTGACTGGCTTGTCTGAGTCTAG
TGTCAAGGTGCGGTTAGCTGCTGTCAGATGTTTGCACAGTTTATCCAGATCTGTACAACAGCTTCGAACC
AGTTTCCAGGATCATGCGGTGTGGAAACCTTTAATGAAGGTTTTACAAAATGCACCCGATGAAATCCTAG
TAGTAGCATCTTCCATGTTATGTAACCTTCTTCTTGAATTTTCTCCAAGTAAAGAGCCAATTTTGGAATC
AGGAGCTGTCGAGCTGCTCTGTGGGTTGACACAGAGTGAAAACCCTGCTCTACGAGTGAATGGGATTTGG
GCTTTAATGAATATGGCATTTCAGGCGGAACAAAAAATAAAAGCAGATATTTTACGAAGTCTGAGTACTG
AACAGTTATTCCGGTTATTGTCAGATTCTGATATGAATGTGCTGATGAAGACATTGGGGCTTCTTAGAAA
TCTCCTCTCCACTCGGCCTCATATAGATAAAATCATGAGTACTCATGGGAAGCAGATTATGCAAGCTGTC
ACTCTGATACTGGAAGGGGAGCATAGCATTGAAGTCAAAGAGCAGACCCTGTGCATCCTAGCCAACATTG
CAGATGGGACAACAGCAAAAGAGCTTATTATGACCAATGATGACATCCTGCAGAAAATCAAATATTACAT
GGGTCATTCACATGTCAAACTGCAGCTTGCTGCCATGTTTTGTATATCAAACCTCATATGGAACGAAGAG
GAAGGTTCACAGGAACGCCAGGATAAATTACGAGACATGGGGATTGTAGATATTCTACACAAACTGAGTC
AGTCGGCAGACTCAAACCTCTGTGACAAGGCAAAGACGGCGCTGCAGCAGTACCTGGCGTGA

Translation (673 aa):
MACLLETPIRMSVLSEVTASSRHYVDRLFDPDPQKVLQGVIDMKNAVIGNNKQKANLIVLGAVPRLLYLL
QQETSSTELKTECAVVLGSLAMGTENNVKSLLDCHIIPALLQGLLSPDLKFIEACLRCLRTIFTSPVTPE
ELLYTDATVIPHLMALLSRSRYTQEYICQIFSHCCKGPDHQTILFNHGAVQNIAHLLTSPSYKVRMQALK
CFSVLAFENPQVSMTLVNVLVDGELLPQIFVKMLQRDKPIEMQLTSAKCLTYMCRAGAIRTDDSCIVLKT
LPCLVRMCSKERLLEERVEGAETLAYLIEPDVELQRIASITDHLIAMLADYFKYPSSVSAITDIKRLDHD
LKHAHELRQAAFKLYASLGANDEDIRKKIIETETMMDRIVTGLSESSVKVRLAAVRCLHSLSRSVQQLRT
SFQDHAVWKPLMKVLQNAPDEILVVASSMLCNLLLEFSPSKEPILESGAVELLCGLTQSENPALRVNGIW
ALMNMAFQAEQKIKADILRSLSTEQLFRLLSDSDMNVLMKTLGLLRNLLSTRPHIDKIMSTHGKQIMQAV
TLILEGEHSIEVKEQTLCILANIADGTTAKELIMTNDDILQKIKYYMGHSHVKLQLAAMFCISNLIWNEE
EGSQERQDKLRDMGIVDILHKLSQSADSNLCDKAKTALQQYLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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