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Report for CCDS23548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23548.1 Public Mus musculus 9 Fbxw13 23 108 98 CCDS HistoryNCBI Gene:211305Re-query CCDS DB by CCDS ID:23548.1Re-query CCDS DB by GeneID:211305See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23548.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061456.7 ENSMUSP00000053786.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061456.7Link to Ensembl Protein Viewer:ENSMUSP00000053786.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000061456Re-query CCDS DB by Protein ID:ENSMUSP00000053786
Original member Current member NCBI NM_177598.3 NP_808266.1 Accepted alive Link to Nucleotide Sequence:NM_177598.3Link to Protein Sequence:NP_808266.1Re-query CCDS DB by Nucleotide ID:NM_177598Re-query CCDS DB by Protein ID:NP_808266Link to BLAST:NP_808266.1

Chromosomal Locations for CCDS 23548.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 109179279 109179384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109180980 109181104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109181399 109181577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109183007 109183217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109184088 109184246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109185247 109185456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109192667 109192785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109194683 109194846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109195036 109195073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109195854 109195943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGGAGATCCATTTGCCTAGTGTGCCGTTGATGAAAATCTTCTCCTATCTGGATGCCTACAGTTTGCTAC
AGGCTGCCCAAGTGAACAAGGACTGGAATGAACTTGCAAGCAGTGATGTCCTATGGAGGAGGTTGTGTCA
GAAGAGATGGCTCTTCTGTGACATGGTTACCCTACAACTCCTGGGCACAGAGACATGGAAGGAGTTCTTC
GTTTCCCGAACATGGCAAGAACATGCCAAGTCCCGGGCAATTCGAGAAGATTTCATTTACAAGGAAATTC
CTGCGGAGTATGGAGTTCGGGCACATCCATGTTATATCTCAGGGCGTGGCTTAACAAGAAACGGACAAGG
CAGGCCAGTCGTCTGTATGGTGACTTCTGTGAACAGGATTTCTACCTGGGATATTCAGGAGGGTGTTTTG
ACCTGGGTAAGCCCAGTACAGCAAGTCGGTATCAAGCTGTTGACTACCCTCCCTGAGATGCACATTGCAG
TCACTGTAGATATTCAATCAACTATCAAACTGTGGGACTGTCAGAACAGTGAAGCTCTGGCAACTAGCAA
CCTGGAATCTCCATGTAAATTGCTGAAAGCTGTCTTTACCAAGGATGGCCCGATGGTCTTGATAGGTGAT
ATCTCCGGAAACCTCTACATCTTTAGGATTCCCGACTTACACCTCATTTCCAAACTCAAAGTATTCCAAT
GCAGTATTAATCAACTCAACTGCTCTCCTCAGAAGAAATGGATCTTTCTGAATAGGAAACACCCACATAT
CTTGCCAAAGGTGTTTTACATGAGCAGCTTACTGAGGACATCAGAATTCTCTGCCCCTGTGTCTACCATT
CTTAAATTTTCATTATGCCAAAGAGCCTTCTGGACCCCAAGAATGGAAGACAGGATAACCCTGATGTCCA
TACGTCGCACCCAAAAGATCACAAAGTTTATCACATTTGATATGAAGCTGAAAGAGATCCAGAACAAAAT
GACTGTTAAAGAACAATTCGTTGCAAGCTTCTCAGTGCCAGATGATATGGGGAGACCAAAATGGTTTGGC
GTTAGTGGTAAGGATGTGATTGTCTGTTCAACTGGATCCTCTCTCTTGCTCTTCAACATAAAAGGTGTCT
ATCTGCAGACAATTATGTACTACACAGACTGGATCTTGAGACTCTGGATGGACCCCATTTATGTCATTGT
CACCTTTAACAATGGCTCTTTGGTTGTGTACGCGTGGGAAGAGAGATGCCAGCAGCTCAATGGGTGTTAT
CAGCTGCAAAGCAGGAGAAGGCTACCACAGCAAAGCTTCATTAACAAAACACTATGTGATGATATGAGCA
TAATTCGAGTGATGACAACTCATTCCATCCCCAGCTTTCTGATGGCATATATCTTGACATCTGATCTTTA
A

Translation (466 aa):
MEIHLPSVPLMKIFSYLDAYSLLQAAQVNKDWNELASSDVLWRRLCQKRWLFCDMVTLQLLGTETWKEFF
VSRTWQEHAKSRAIREDFIYKEIPAEYGVRAHPCYISGRGLTRNGQGRPVVCMVTSVNRISTWDIQEGVL
TWVSPVQQVGIKLLTTLPEMHIAVTVDIQSTIKLWDCQNSEALATSNLESPCKLLKAVFTKDGPMVLIGD
ISGNLYIFRIPDLHLISKLKVFQCSINQLNCSPQKKWIFLNRKHPHILPKVFYMSSLLRTSEFSAPVSTI
LKFSLCQRAFWTPRMEDRITLMSIRRTQKITKFITFDMKLKEIQNKMTVKEQFVASFSVPDDMGRPKWFG
VSGKDVIVCSTGSSLLLFNIKGVYLQTIMYYTDWILRLWMDPIYVIVTFNNGSLVVYAWEERCQQLNGCY
QLQSRRRLPQQSFINKTLCDDMSIIRVMTTHSIPSFLMAYILTSDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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