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Report for CCDS23552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23552.1 Public Mus musculus 9 Fbxw19 23 108 98 CCDS HistoryNCBI Gene:235612Re-query CCDS DB by CCDS ID:23552.1Re-query CCDS DB by GeneID:235612See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23552.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076617.6 ENSMUSP00000075918.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076617.6Link to Ensembl Protein Viewer:ENSMUSP00000075918.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000076617Re-query CCDS DB by Protein ID:ENSMUSP00000075918
Original member Current member NCBI NM_177703.3 NP_808371.1 Accepted alive Link to Nucleotide Sequence:NM_177703.3Link to Protein Sequence:NP_808371.1Re-query CCDS DB by Nucleotide ID:NM_177703Re-query CCDS DB by Protein ID:NP_808371Link to BLAST:NP_808371.1

Chromosomal Locations for CCDS 23552.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 109478629 109478734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109481558 109481682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109481970 109482148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109483287 109483497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109484349 109484507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109485872 109486081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109493490 109493608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109494614 109494777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109494972 109495009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109495758 109495847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGGAGATCCATCTACCTAGTTTGCCTATGATGAAAATCCTCTCCTATCTGGATGCTTACAGTTTGCTAC
AGGCTGCCAAAGTGAACAAGAACTGGAATGAACTTGCAAGCAGTGATGTCCTGTGGAGGAAGTTGTGTCA
GAAGAGATGGCTCTACTGTGACAGGGTCACCCTACAGCTCCATGGCTTAGAGACATGGAAGCAGTTCTTC
ATTTCCAGAACATGGCAAGAACACGCCAAGACCCGGGCAAAGCCAGAAGATTTCAATTACAAAGAAATTC
CTGTGGCATTTGAATTTCGGGCACATCCATGTTATATCTCAAGGCATGGCTTAATAAGAAATGGACAAGG
GAAGTCTGCTGTCTGTATGGTGACTTCCACGAATAGGATTTCGACCTGGGATGTTCACGAGGGTGCTATG
ACCTGGGTAAGCCCAGTACAACCCTCCTATATCACACGGATGACTACCCTCCCTGAGATGCACATTGCAG
TCACTATAGATATGCAATCAAATATCAAACTGTGGGACTGCCACAACAGGAAAGTTTTGGCGACTACGGG
CCTGTTGTCTTCCTGTCAATTACTACAAGCTGTCTTTACAAATGATAGCCCAATTGTCTTGGTAGGTGAT
ATCTTGGGAAACCTCTACATCTTTAGGATTCCTGACTTACACCTCATTTCCAAGGTGAATGTATTCCCAT
ACGGTATTGATGAACTTCACTGCTCTCCTCAGAAGAAATGGGTCCTTCTGATAGGGAAACAAAGACATGT
CTTGACAAAGGTGTTTTACATGAGCAGCTTACTGAGGACATCAGAATTCTCTGCCCCTGTGTCTACCGAT
CTCAAATTTTCATTGTGCCAAAGAGCCTTCTGGACTCCAAGAAGGGAAGACAGGATAACCTTGATGTCCA
GTACTATACCCCCAGACCCCACAAAATTTGCCACATTTGATATGAAGCTGGAAGAGATCGAGAACAAAGT
AACTATTCAAGGACATTTGGTAGCTAGTTTCTCTTTGCAAGACTGCAAGGAGCGCGCAGAATGGATGGGA
GTCAGTGATAAGGATGTGATTGTTTGTTCAACTGGATCCTCTCTCTTGCTCTTCGACATAAATGGTCTCC
GTCTGCAGACATTTCAGTACTGCCCAGAAGAAATCTTGAGACTCTGTGTGGACCCTGTTCATGTCATTGT
CACCTGTAACAATGGCTCTTTGGATGTGTACGTGTGGGAGGAGAGAAGCCCACTGCTTAGGAGGTGTTAT
CGACTACGAAAAAGGGGATATCTGCCACTGTCTGGCTTCATTATCAAAACATTATGTGATGAATCAAGCA
TAATTTTAGTGATGACTAGTAGTCCCATTCCCTGCTTTCTGATGGCATATACCTTGAAAGTCTGCTCTTG
A

Translation (466 aa):
MEIHLPSLPMMKILSYLDAYSLLQAAKVNKNWNELASSDVLWRKLCQKRWLYCDRVTLQLHGLETWKQFF
ISRTWQEHAKTRAKPEDFNYKEIPVAFEFRAHPCYISRHGLIRNGQGKSAVCMVTSTNRISTWDVHEGAM
TWVSPVQPSYITRMTTLPEMHIAVTIDMQSNIKLWDCHNRKVLATTGLLSSCQLLQAVFTNDSPIVLVGD
ILGNLYIFRIPDLHLISKVNVFPYGIDELHCSPQKKWVLLIGKQRHVLTKVFYMSSLLRTSEFSAPVSTD
LKFSLCQRAFWTPRREDRITLMSSTIPPDPTKFATFDMKLEEIENKVTIQGHLVASFSLQDCKERAEWMG
VSDKDVIVCSTGSSLLLFDINGLRLQTFQYCPEEILRLCVDPVHVIVTCNNGSLDVYVWEERSPLLRRCY
RLRKRGYLPLSGFIIKTLCDESSIILVMTSSPIPCFLMAYTLKVCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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