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Report for CCDS23708.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23708.1 Public Mus musculus 10 Cited2 23 108 98 CCDS HistoryNCBI Gene:17684Re-query CCDS DB by CCDS ID:23708.1Re-query CCDS DB by GeneID:17684See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23708.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038107.8 ENSMUSP00000038405.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038107.8Link to Ensembl Protein Viewer:ENSMUSP00000038405.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000038107Re-query CCDS DB by Protein ID:ENSMUSP00000038405
Original member Current member EBI ENSMUST00000219558.1 ENSMUSP00000151452.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219558.1Link to Ensembl Protein Viewer:ENSMUSP00000151452.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219558Re-query CCDS DB by Protein ID:ENSMUSP00000151452
Original member Current member NCBI NM_010828.3 NP_034958.2 Accepted alive Link to Nucleotide Sequence:NM_010828.3Link to Protein Sequence:NP_034958.2Re-query CCDS DB by Nucleotide ID:NM_010828Re-query CCDS DB by Protein ID:NP_034958Link to BLAST:NP_034958.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034958.2 269 O35740-1 269 100% 0 0

Chromosomal Locations for CCDS 23708.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 17723946 17724755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGGCAGACCATATGATGGCCATGAACCACGGGCGCTTCCCCGACGGCACCAACGGGCTGCACCACCACC
CTGCCCACCGCATGGGCATGGGGCAGTTCCCGAGCCCGCATCATCACCAGCAGCAGCAGCCCCAGCACGC
CTTCAACGCCCTCATGGGCGAGCACATACACTACGGCGCGGGCAACATGAATGCCACGAGCGGCATCAGG
CACGCCATGGGGCCGGGGACTGTGAACGGGGGGCACCCCCCGAGCGCTCTGGCCCCGGCCGCCAGGTTTA
ACAACTCCCAGTTCATGGGTCCCCCGGTGGCCAGCCAGGGAGGCTCCCTGCCGGCCAGCATGCAGCTGCA
GAAGCTCAACAACCAGTATTTCAACCATCACCCCTACCCCCACAACCACTACATGCCGGATTTGCACCCC
ACTGCAGGCCACCAGATGAACGGGACAAACCAGCACTTCCGAGATTGCAACCCCAAGCACAGCGGAGGCA
GCAGCACCCCTGGCGGTGCGGGTGGCAGCGGCACCCCCGGCGGCTCCGGCGGCACCTCGGGCGGCGCGGG
TGGCAGCAGCGCGGGCGGCAGCGGCGGTGGCAGCACCATGCCCGCCTCGGTGGCTCACGTCCCCGCGGCA
ATGCTGCCGCCCAATGTCATAGACACTGATTTCATCGACGAGGAAGTGCTTATGTCCTTAGTGATAGAAA
TGGGTTTGGACCGCATCAAGGAGCTGCCCGAACTCTGGCTGGGCCAAAATGAGTTTGATTTTATGACGGA
CTTCGTGTGCAAGCAGCAGCCCAGCAGAGTCAGCTGTTGA

Translation (269 aa):
MADHMMAMNHGRFPDGTNGLHHHPAHRMGMGQFPSPHHHQQQQPQHAFNALMGEHIHYGAGNMNATSGIR
HAMGPGTVNGGHPPSALAPAARFNNSQFMGPPVASQGGSLPASMQLQKLNNQYFNHHPYPHNHYMPDLHP
TAGHQMNGTNQHFRDCNPKHSGGSSTPGGAGGSGTPGGSGGTSGGAGGSSAGGSGGGSTMPASVAHVPAA
MLPPNVIDTDFIDEEVLMSLVIEMGLDRIKELPELWLGQNEFDFMTDFVCKQQPSRVSC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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