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Report for CCDS23773.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23773.1 Public Mus musculus 10 Rwdd1 23 108 98 CCDS HistoryNCBI Gene:66521Re-query CCDS DB by CCDS ID:23773.1Re-query CCDS DB by GeneID:66521See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23773.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019917.5 ENSMUSP00000019917.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019917.5Link to Ensembl Protein Viewer:ENSMUSP00000019917.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000019917Re-query CCDS DB by Protein ID:ENSMUSP00000019917
Original member Current member NCBI NM_025614.3 NP_079890.1 Accepted alive Link to Nucleotide Sequence:NM_025614.3Link to Protein Sequence:NP_079890.1Re-query CCDS DB by Nucleotide ID:NM_025614Re-query CCDS DB by Protein ID:NP_079890Link to BLAST:NP_079890.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079890.1 243 Q9CQK7 243 100% 0 0

Chromosomal Locations for CCDS 23773.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 33996727 33996848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34001137 34001199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34001658 34001790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34002424 34002567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34008993 34009123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34012072 34012137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34019366 34019438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGACAGATTACGGCGAGGAACAACGCAACGAGTTGGAGGCTCTGGAGTCCATCTACCCCGACTCCTTCA
CAGTGTTATCAGAAAGCCCGCCAAGCTTCACCATTACTGTGACATCGGAGGCTGGAGAAAATGATGAAAC
TGTCCAGACTACTCTCAAGTTTACATACAGTGAAAAGTACCCTGATGAGACTCCACTTTATGAAATATTC
TCCCAGGAAAATCTAGAAGACAATGATGTCTCAGACATTTTAAAATTACTGGCATTGCAGGCCGAGGAGA
ATCTCGGCATGGTGATGATCTTCACCCTCGTGACAGCTGTTCAAGAAAAGTTAAATGAAATAGTTGATCA
GATCAAAACAAGAAGAGAGGAAGAAAAGAAGCAGAAAGAAAAGGAAGCAGAAGAAGCAGAGAAGAAACTG
TTCCATGGCACCCCTGTTACGATTGAGAATTTCTTGAGTTGGAAGGCCAAATTTGATGCAGAACTCCTGG
AAATTAAAAAGAAACGAATGAAAGAAGAGGAGCAAGCAGGGAAAAATAAACTAAGTGGGAAACAGTTATT
TGAAACAGATCACAATCTTGACACATCTGATATCCAGTTCCTGGAGGATGCTGGGAACAATGTGGAGGTG
GATGAGTCATTGTTCCAAGAAATGGACGATTTGGAGCTAGAAGATGGTGAAGATGATCCTGACTACAATC
CTGTTGCCCCAGGGAGTGACTCCTCAGACTGA

Translation (243 aa):
MTDYGEEQRNELEALESIYPDSFTVLSESPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDETPLYEIF
SQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKKL
FHGTPVTIENFLSWKAKFDAELLEIKKKRMKEEEQAGKNKLSGKQLFETDHNLDTSDIQFLEDAGNNVEV
DESLFQEMDDLELEDGEDDPDYNPVAPGSDSSD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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