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Report for CCDS23812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23812.1 Public Mus musculus 10 Snx3 23 108 98 CCDS HistoryNCBI Gene:54198Re-query CCDS DB by CCDS ID:23812.1Re-query CCDS DB by GeneID:54198See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23812.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019939.11 ENSMUSP00000019939.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019939.11Link to Ensembl Protein Viewer:ENSMUSP00000019939.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000019939Re-query CCDS DB by Protein ID:ENSMUSP00000019939
Original member Current member NCBI NM_017472.4 NP_059500.2 Accepted alive Link to Nucleotide Sequence:NM_017472.4Link to Protein Sequence:NP_059500.2Re-query CCDS DB by Nucleotide ID:NM_017472Re-query CCDS DB by Protein ID:NP_059500Link to BLAST:NP_059500.2

Chromosomal Locations for CCDS 23812.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 42502331 42502492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42525954 42526049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42533149 42533273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42534653 42534758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGGCGGAGACGGTAGCGGACACCCGGCGGCTCATCACCAAGCCGCAGAATCTGAATGACGCCTACGGGC
CGCCCAGCAACTTCCTCGAGATCGACGTGAGCAACCCGCAGACCGTGGGGGTCGGCCGGGGCCGCTTCAC
CACCTACGAGATCAGGGTCAAGACAAATCTTCCTATCTTCAAGCTGAAGGAATCTACTGTTAGAAGAAGA
TACAGTGACTTTGAGTGGCTTCGAAGTGAACTAGAAAGAGAGAGCAAGGTTGTAGTTCCCCCACTCCCTG
GGAAAGCATTTTTGCGGCAGCTTCCTTTTAGAGGAGACGATGGAATATTTGATGACAATTTCATCGAGGA
AAGGAAGCAAGGGCTGGAACAGTTCATAAACAAGGTCGCTGGTCATCCTCTGGCCCAGAATGAACGTTGT
CTTCACATGTTTTTACAGGATGAAATTATAGATAAAAGCTATACTCCATCTAAAATAAGACATGCCTGA

Translation (162 aa):
MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRR
YSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERC
LHMFLQDEIIDKSYTPSKIRHA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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