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Report for CCDS23835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23835.1 Public Mus musculus 10 Rfx6 23 108 98 CCDS HistoryNCBI Gene:320995Re-query CCDS DB by CCDS ID:23835.1Re-query CCDS DB by GeneID:320995See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23835.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050455.4 ENSMUSP00000057384.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050455.4Link to Ensembl Protein Viewer:ENSMUSP00000057384.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000050455Re-query CCDS DB by Protein ID:ENSMUSP00000057384
Original member Current member NCBI NM_177306.3 NP_796280.1 Accepted alive Link to Nucleotide Sequence:NM_177306.3Link to Protein Sequence:NP_796280.1Re-query CCDS DB by Nucleotide ID:NM_177306Re-query CCDS DB by Protein ID:NP_796280Link to BLAST:NP_796280.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796280.1 663 Q8C7R7-3 663 100% 0 0

Chromosomal Locations for CCDS 23835.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 51711828 51711890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 51711981 51712094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 51713467 51713516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 51715890 51716049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 51718063 51718207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 51719947 51720056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 51721501 51721618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 51723001 51723123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 51723733 51723939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 51725367 51725879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 51726682 51726894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 51729631 51729806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1992 nt):
ATGATGTACAAAACTCACTGCCAGTGCATACTCGACAATGCCATCAATGGGAACTTTGAAGAGATCCAGC
ATTTCTTACTACACTTTTGGCAAGGAATGCCAGACCATCTCCTTCCCCTGCTTGAAAATCCTGTTATCAT
TGATATTTTCTGTGTCTGTGACTCAATTCTTTATAAGGTTCTTACAGATGTCCTCATTCCTGCAACAATG
CAAGAAATGCCTGAAAGTTTGTTAGCAGATATAAGAAATTTTGCTAAAAATTGGGAACAGTGGGTTGTTT
CATCCTTGGAAAACTTGCCAGAAGCCCTCATTGATAAGAAAATCCCCATTTTGCGAAGATTTGTATCTTC
CCTGAAGCGACAGACATCTTTCTTGCATCTTGCTCAGATTGCCAGACCAGCTCTCTTTGACCAGCATGTG
GTGAATGCCATGGTATCTGATATTGAAAAGGTTGACTTAAATAGTATTGGGTCTCAGGCTCTTCTTACCA
TATCCAACAGCACAGACACGGAATCTGACATCTACAGTGAACATGACTCTATTACTGTGTTCCAAGAACT
GAAAGATCTCCTTAAGAAGAATGCTACAGTGGAGGCATTTATTGAATGGTTGGACACTGTGGTAGAGCAG
AGAGTTATTAAGATGAGCAAACAAAATGGAAGATCTCTGAAGAAGAGGGCTCAAGACTTTCTGCTCAAAT
GGAGCTTTTTTGGTGCCCGCGTGATGCATAATCTTACCTTGAACAACGCATCAAGTTTTGGCTCTTTCCA
TCTGATCCGAATGCTTCTGGATGAGTACATTCTCCTGGCCATGGAGACTCAATTTAACAATGACAAAGAG
CAGGAACTACAGAATTTATTGGACAAGTATATGAAGAACTCGGATGCGAGTAAAGCTGCCTTCACAGCTT
CCCCGAGCTCTTGCTTTCTGGCCAACCGAAATAAGGCTAGCTCACTTGCCAGTGACACTGTGAAGAACGA
AAGCCACGTGGAGACATCCTATGTCCCTCTGCCTTCCAGCCAGCCTGGAGCCATACCCCCTGCTCTGCAC
CCATTCTCAACTGAGGACACTGATAACATGCCACTCCCAGGTCAAATAGAGCTTTCACAAAGTACTGGCC
ATCTGATGACACCACCGATTTCTCCAGCCATAGCAAGCAGAGGAAGTGTTATTAACCAAGGGCCAATGGC
GAGCAGACCCCCGAGCGTGGGCACAGTTCTCTCAGCTCCAACACATTGCTCAACATATGCAGAACCAATT
TATCCTACGCTCTCTCCAGCCAACCACGACTTTTATGGGACCAACTCTAACTATCAGACTATGTTTAGGA
CACAGTCTCACCCTGCATCAAGCCTCTATGCTCACCGTGCAGAGCATGGGCGGTGCATGGCCTGGACTGA
ACAGCAGCTTTCTAGAGACTTCTTTGGTGGCAGTTGTGCTGGGTCTCCATATAATTGTAGGCCACCTTCC
AGTTATGGACCATCCACACACACACAAGAGTCACACAGCATGCAGGTTTTGAACACAGGAAGCTTCAATT
TCCTTAGTAATGCAGGAGCTGGCAGCTGCCAAGGGTCAACATTGCCTTCTAATTCTCCCAATGGATACTA
TGGAAACAATATAAACTACTCAGAGGCACATAGGCTTGGATCGATGGTGAACCAACATGTTTCAGTCATC
AGCAGTGTGCGCTCCCTGCCTCCCTACAGTGATATTCATGATCCACTTAACATTTTAGATGACAGCAGCC
GGAAGCAGAACAACTCGTTTTATGCAGACACATTGTCTCCTGTTGCATGTCGTACTACTGTAGTAGCTTC
CAACTTGCAAACCCAGATTCCTTCATCTTCATCCCAGTGTATGTATGGAACTTCCAATCAGTATCCAGTG
CAAGATAGTCTGGACTCCAATGCAGCAAGCAACAGAGAAATGGTGTCCTCTTTACCACCCATCAACACCG
TGTTTATGGGGACAGCAGCTGGAGACACTTAA

Translation (663 aa):
MMYKTHCQCILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVIIDIFCVCDSILYKVLTDVLIPATM
QEMPESLLADIRNFAKNWEQWVVSSLENLPEALIDKKIPILRRFVSSLKRQTSFLHLAQIARPALFDQHV
VNAMVSDIEKVDLNSIGSQALLTISNSTDTESDIYSEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQ
RVIKMSKQNGRSLKKRAQDFLLKWSFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQFNNDKE
QELQNLLDKYMKNSDASKAAFTASPSSCFLANRNKASSLASDTVKNESHVETSYVPLPSSQPGAIPPALH
PFSTEDTDNMPLPGQIELSQSTGHLMTPPISPAIASRGSVINQGPMASRPPSVGTVLSAPTHCSTYAEPI
YPTLSPANHDFYGTNSNYQTMFRTQSHPASSLYAHRAEHGRCMAWTEQQLSRDFFGGSCAGSPYNCRPPS
SYGPSTHTQESHSMQVLNTGSFNFLSNAGAGSCQGSTLPSNSPNGYYGNNINYSEAHRLGSMVNQHVSVI
SSVRSLPPYSDIHDPLNILDDSSRKQNNSFYADTLSPVACRTTVVASNLQTQIPSSSSQCMYGTSNQYPV
QDSLDSNAASNREMVSSLPPINTVFMGTAAGDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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