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Report for CCDS23859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23859.1 Public Mus musculus 10 Gcc2 23 108 98 CCDS HistoryNCBI Gene:70297Re-query CCDS DB by CCDS ID:23859.1Re-query CCDS DB by GeneID:70297See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23859.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057659.13 ENSMUSP00000054033.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057659.13Link to Ensembl Protein Viewer:ENSMUSP00000054033.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000057659Re-query CCDS DB by Protein ID:ENSMUSP00000054033
Original member NCBI NM_027375.2 NP_081651.2 Updated not alive Link to Nucleotide Sequence:NM_027375.2Link to Protein Sequence:NP_081651.2Re-query CCDS DB by Nucleotide ID:NM_027375Re-query CCDS DB by Protein ID:NP_081651
Current member NCBI NM_027375.3 NP_081651.2 Accepted alive Link to Nucleotide Sequence:NM_027375.3Link to Protein Sequence:NP_081651.2Re-query CCDS DB by Nucleotide ID:NM_027375Re-query CCDS DB by Protein ID:NP_081651Link to BLAST:NP_081651.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081651.2 1680 Q8CHG3 1680 100% 0 0

Chromosomal Locations for CCDS 23859.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 58255566 58255571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58255829 58255882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58256820 58256904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58258241 58258308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58267967 58268071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58269262 58271706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58272333 58272405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58274736 58274836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58274936 58275034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58276578 58276697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58278787 58278951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58280592 58280696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58281357 58281519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58285943 58286043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58286133 58286210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58287142 58287279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58288633 58288754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58290300 58290476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58292565 58292782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58294711 58294905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58296088 58296239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58298664 58298865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58304094 58304164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5043 nt):
ATGGAGGATTCTGCTCCAGATGCCGTAGCTGCAGCACCCTCCGGGACCCCGAAATCCAAGCTAGAAACGT
TGCCCAGAGAAGATCTCATCAAGTTTGCCAAGAAGCAAATGATGCTCCTGCAGAAAGCCAAAGCAAGGTG
TACAGAATTAGACAAAGAAGTTGAAGAACTCAAATCAAAACCTGTTGATGGAGGAACTGATGATATTATT
AAGGTACTAACTGAACGCTTGGATGCTCTTCTTCTGGAAAAAGCAGAGACTGAACAACAGTGTCTATGTC
TGAAAAAAGAAAATGTTAAAATGAAGCAAGAGGTTGAGGATTCTGTAACTAAACTGGAAGAGACACACAA
AGAGTTTGAACAATCACATAGAAACTACGTAAAAGAAATTGAAAGCTGTAAAAATGAGCTGATGGCAGTG
CACTCAGAGCACAGCAAAGAAACGGCCATCTTACAAAAAGAACTGGAAGAAGCTGTCCATAAGCAAGTAG
AGCTGAGAGAGCAGCTTAAGTCTCAGAGTGACTCTGAAGATAACGTGAGAAAACTGCAGGAAGAGATTCA
AAACATCACAGCAGCATTTGAGGAACAGATTTCATGTCTAGAGAAGAAATTAGAAGCTACCAGTGATGAA
AAACAACAAGAGATTATTCATCTCCAGAAAGTCATTGAGGACAAGGCTCAGCACTACCAAAAAGATATTA
ATACTTTCCAAGCAGAGATTTTGCAGCTGAGAGCTACACACAAAGAAGAAGTTACTGAGCTGATGTCTCA
AATAGAAACATCAGCTAAAGAACACGAGGCAGAAATAAATAAACTAAAAGAGAACAGAGTGACACAGTGT
GAGGCAAGTGAGAACATTCCAGAGAAATACCAATGTGAATCGGAAAACTTAAATGAAGTCGCCTCAGATG
CAAGCCCGGAGAGTCAGAATTGCTCTGTGGCCTTACAGGAAGATCCTTCTGCGGAACAAACAGTATGTGA
TAAAGTCAGACAATTGGAAGATTCATTAAAAGAACTGGAATCTCAACATAGTATCTTAAAAGATGAAGTA
ACTTATATGAATAATCTCAAGTTAAAACTTGAAATGGATGCCCAGCATATAAAGGATGAGTTTTTCCATG
AACGAGAAGACTTAGAGTTTAAAATTAATGAACTGTTGCTGGCTAAAGAAGAACAGGGCTATGTAGTAGA
AAAATTAAAATATGAGCGAGAAGATTTAAATAGGCAACTTTGCTGTGCTGTGGAACAACATAACAAAGAA
ATACAGCGTCTTCAGGAACACCATCAGAAAGAAGTCTCTGAACTAAGTGAGACATTTATATCAGGTTCAG
AAAAAGAAAAGTTAGCATTGATGTTTGAAATACAAGGTCTTAAGGAACAGTGTGAAAATCTACAACATGA
AAAGCAAGAGGTAGTTCTAAACTATGAGAGTTTACGAGAGATGATGGAAATTTTACAAACAGAACTTGGA
GAATCTGCTGGAAAAATAAGTCAAGAGTTTGAAACAATGAAGCAACAGCAAGCATCTGATGTTCATGAGC
TTCAGCAGAAGCTAAGAAGTGCTTTTAATGAAAAAGATGCTCTTCTTGAAACTGTGAATCGCCTCCAAGG
AGAAAATGAAAAATTATTATCTCAACAAGAATTAGTACCAGAACTTGAAAGTACCATAAAGAACCTTCAG
GCAGATAATAGCATGTACTTAGCCAGTCTTGGTCAAAAAGATACCATGTTACAAGAATTAGAAGCAAAGA
TAAGTTCTCTTGCTAAAGAAAAAGATGACTTTATAAGTAAAATCAAAACTTCCCATGAAGAGATGGATGA
TCTCCATCAGAAATGGGAAAGGGAACAGAGACTGTCTGTAGAACTCAGGGAAGCAGCAGGGCAAGCTGCC
CAGCACAACAGTGAACTGAGACAAAGAGTAAGTGAATTAACAGGGAAACTAGATGAACTAGTAAGAGAAA
AGAGTCAAAATGACCAAAGCATTACGGTTCAAATGAAAACTATGACGGAAGATCAAGAAGCTCTGTCATC
TAAAATCAAGTCTCTTTATGAGGAAAACAATAGACTACATTCAGAAAAGGCCCAGTTGAGCAGGGATTTA
GAAGCACTTCAGGCTCAACAAGATTTTGCCCATAAAGAACATGTTGCTGAATTCGAAAAGAAACTCCAGT
TAATGGTTGAGGAGCGAGACGATTTAAATAAACTGCTTGAAAATGAGCAAGTTCAGAAGTCATTTGTTAA
AACTCAGTTGTATGAGTATCTTAAGCAACTGAGGGCAAGCATTTTAGAAGAAAATGAAGAGGAAGATGTT
GTCAAACTTATACAAGCTGTAGGTGAATCTTTAGTGAAAGTAAAGGAAGAAGAACATAACTTAGTCTTTG
AATATGATGCAAGGGTATTAGAATTAGAAAATAAGATTAAGTGTCTTCAAGAGGACAGTGCAGTTCAGTG
TGAAGAACTAAGGACTTTAGTAAGAGACTCTGAGCAAGAGAAAATTCTCCTAAGAAAAGAATTAGATGCA
GTCACATCAGCAAAAGAGGCCCTCCAACTTGATCTTTTAGAAATGAAGAATACTAATGAGAAAGCAAGCC
TTGAAAACCAGACTCTTTCAACTCAGGTTGAAGAATTATCTCAGACATTACACAGCAGAAATGAAGTCCA
TGATGAAAAGGTTCTTGTAATAGAACATGAAAACCTAAGGCTACTGCTTAAACAGAGGGAATCTGAACTC
CAAGATGTGAGAGCAGAATTGATACTGCTAAAGGATTCCTTAGAGAAATCGCCTTCTGTAAAAAATGATC
AACTTTCATTGGTAAAAGAGCTGGAAGAAAAAATAGAAAGTCTGGAAAAAGAATCCAAAGACAAGGATGA
GAAAATAAGTAAGATAAAACTAGTTGCTGTGAAAGCAAAGAAAGAACTAGATTCTAACAGGAAAGAGGCC
CAGACACTACGGGAAGAACTGGAATCCGTGCGGTCAGAAAAGGACCGCCTGTCTGCTTCTATGAAGGAGT
TCCTCCAAGGAGCAGAGAGCTATAAGAGTCTTCTGTTAGAATATGATAAGCAGTCAGAACAGCTGGATGT
GGAAAAAGAACGTGCTCATAATTTTGAACGTCATATAGAAGACCTTACCAAACAATTAAGAAATTCGACT
TGCCAGTATGAAAGACTAACTTCAGACAACGAGGATCTCCTGGCTCGAATTGAGACCCTGCAGGCTAATG
CCAAGTTGTTAGAAGCACAGATCTTAGAAGTCCAGAAAGCCAAAGGAGTAGTAGAAAAAGAACTGGACGC
TGAAAAACTTCAGAAAGAGCAGAAAATTAAGGAACATGTCAGTACTGTAAATGAGCTCGAAGAACTCCAA
CTCCAATTTCAAAAGGAAAAGAAGCAGCTTCAGAAAACAATGCAAGAATTAGAGCTGGTTAAAAAGGATG
CCCAACAGACCACATTGATGAATATGGAAATAGCAGATTACGAACGTTTGATGAAAGAACTAAATCAAAA
GTTAACAAATAAAAACAGTACAATAGAAGATTTGGAGCAAGAAATGAAAATTCAGAAAGAGAAACAAGAA
ACCCTACAAGAAGAAATAACTTCACTGCAGTCGTCAGTACAGCACTATGAAGAAAAGAACACTAAAATCA
AGCAGCTGCTTGTGAAAACCAAAAAGGAGCTGGCAGATGCAAAGCAAGCGGAAACCGATCACTTACTACT
CCAGGCATCTTTAAAGGGTGAGCTGGAAGCAAGCCAGCAGCAAGTAGAAGTCTATAAAATTCAGCTGGCT
GAGATGACATCTGAGAAACACAAAATCCATGAGCATCTGAAGACTTCTGCGGAACAGCACCAGCGCACAC
TGAGTGCATACCAGCAGAGGGTGGTGGCCCTGCAGGAGGAGAGTCGCGCTGCCAAGGCAGAACAAGCTGC
TGTCACCTCTGAATTTGAGAGCTACAAAGTCCGAGTTCATAACGTTCTAAAGCAACAGAAAAATAAATCT
GTGTCTCAGGTTGAAACTGAGGGAGCTAAACAAGAAAGGGAACACCTGGAAATGCTGATTGACCAACTGA
AAATCAAGTTACAGGACAGCCAAAATAGCTTACAAATCAGTGTATCGGAGTACCAGACCCTGCAGGCTGA
GCACGACACTCTGCTAGAGAGGCACAACCGGATGCTGCAGGAAACTGTGACCAAAGAGGCAGAACTTCGG
GAAAAGCTATGTTCAGTTCAATCTGAGAACACCATGATGAAGTCTGAGCACTCGCAGACAATGTGTCAGC
TAACATCCCAGAATGAAGCACTCCGTACCAGCTTCCGAGACCAAGTTCGACACTTGCAGGATGAGCACAG
AAAGACAGTGGAGACTCTGCAGCACCAGCTCTCCAAGCTGGAAGCTCAGCTCTTCCAGCTCAAGAGTGAG
CCATCCACAAGAAGCCCTGCTTCTTCCCATCAACCTTCGAAAAGCCTCCGAGAAAGAAGAACCACAGACC
TCCCCCTTCTGGACATGCACACTGTGGCCCGCGAGGAGGGGGAGGGCATGGAGACAACTGACAGCGAGTC
TGTGTCGTCGGCAGGCACACACATTCAGTCCTTAGAGCAGCTCCTTAGCTCTCCTGACACCAAGCTTGAA
CGCCTTGCAGAGACCTCCTTGTGGCATAATGAATTTACCAAAGAAGAATTAGCTGAGAAGCTCAGCTCCA
CCACGAAGAGTGCAGATCACTTAAACGGCCTGCTTCGGGAGACAGAGGCTACCAACGCTATCCTTATGGA
GCAAATTAAGCTTCTCAAGAGTGAAATAAGAAGACTGGAAAGAAACCAAGAGCGTGAGAAGTCTGTGGCT
AACCTGGAGTACTTGAAGAATGTCTTGCTGCGGTTCATTTTCCTGAAGCCGGGTAGTGAAAGAGAGAGGC
TTCTGCCTGTGATAGACACCATGCTGCAGCTCAGCCCTGAGGAAAAGGGAAAGCTTGCCACAGTTGCTCA
AGGTGAGGAAGAAAGTGCTTCTCGTTCCTCTGGATGGGCGTCCTATCTGCATAGCTGGTCTGGACTGCGA
TAG

Translation (1680 aa):
MEDSAPDAVAAAPSGTPKSKLETLPREDLIKFAKKQMMLLQKAKARCTELDKEVEELKSKPVDGGTDDII
KVLTERLDALLLEKAETEQQCLCLKKENVKMKQEVEDSVTKLEETHKEFEQSHRNYVKEIESCKNELMAV
HSEHSKETAILQKELEEAVHKQVELREQLKSQSDSEDNVRKLQEEIQNITAAFEEQISCLEKKLEATSDE
KQQEIIHLQKVIEDKAQHYQKDINTFQAEILQLRATHKEEVTELMSQIETSAKEHEAEINKLKENRVTQC
EASENIPEKYQCESENLNEVASDASPESQNCSVALQEDPSAEQTVCDKVRQLEDSLKELESQHSILKDEV
TYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINELLLAKEEQGYVVEKLKYEREDLNRQLCCAVEQHNKE
IQRLQEHHQKEVSELSETFISGSEKEKLALMFEIQGLKEQCENLQHEKQEVVLNYESLREMMEILQTELG
ESAGKISQEFETMKQQQASDVHELQQKLRSAFNEKDALLETVNRLQGENEKLLSQQELVPELESTIKNLQ
ADNSMYLASLGQKDTMLQELEAKISSLAKEKDDFISKIKTSHEEMDDLHQKWEREQRLSVELREAAGQAA
QHNSELRQRVSELTGKLDELVREKSQNDQSITVQMKTMTEDQEALSSKIKSLYEENNRLHSEKAQLSRDL
EALQAQQDFAHKEHVAEFEKKLQLMVEERDDLNKLLENEQVQKSFVKTQLYEYLKQLRASILEENEEEDV
VKLIQAVGESLVKVKEEEHNLVFEYDARVLELENKIKCLQEDSAVQCEELRTLVRDSEQEKILLRKELDA
VTSAKEALQLDLLEMKNTNEKASLENQTLSTQVEELSQTLHSRNEVHDEKVLVIEHENLRLLLKQRESEL
QDVRAELILLKDSLEKSPSVKNDQLSLVKELEEKIESLEKESKDKDEKISKIKLVAVKAKKELDSNRKEA
QTLREELESVRSEKDRLSASMKEFLQGAESYKSLLLEYDKQSEQLDVEKERAHNFERHIEDLTKQLRNST
CQYERLTSDNEDLLARIETLQANAKLLEAQILEVQKAKGVVEKELDAEKLQKEQKIKEHVSTVNELEELQ
LQFQKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNSTIEDLEQEMKIQKEKQE
TLQEEITSLQSSVQHYEEKNTKIKQLLVKTKKELADAKQAETDHLLLQASLKGELEASQQQVEVYKIQLA
EMTSEKHKIHEHLKTSAEQHQRTLSAYQQRVVALQEESRAAKAEQAAVTSEFESYKVRVHNVLKQQKNKS
VSQVETEGAKQEREHLEMLIDQLKIKLQDSQNSLQISVSEYQTLQAEHDTLLERHNRMLQETVTKEAELR
EKLCSVQSENTMMKSEHSQTMCQLTSQNEALRTSFRDQVRHLQDEHRKTVETLQHQLSKLEAQLFQLKSE
PSTRSPASSHQPSKSLRERRTTDLPLLDMHTVAREEGEGMETTDSESVSSAGTHIQSLEQLLSSPDTKLE
RLAETSLWHNEFTKEELAEKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQEREKSVA
NLEYLKNVLLRFIFLKPGSERERLLPVIDTMLQLSPEEKGKLATVAQGEEESASRSSGWASYLHSWSGLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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