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Report for CCDS23874.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23874.2 Public Mus musculus 10 Tbata 23 108 98 CCDS HistoryNCBI Gene:65971Re-query CCDS DB by CCDS ID:23874.2Re-query CCDS DB by GeneID:65971See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 23874.1
The coding region has been updated to extend the N-terminus and to represent an alternative splice pattern that is better supported by the available transcript and protein data. This CCDS is based on the splice pattern of AK132793.1, whose AUG translation initiation codon is better supported than the CUG start codon that was used in the previous CCDS representation.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 23874.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121297.7 ENSMUSP00000113253.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121297.7Link to Ensembl Protein Viewer:ENSMUSP00000113253.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121297Re-query CCDS DB by Protein ID:ENSMUSP00000113253
Original member Current member NCBI NM_001017441.2 NP_001017441.2 Accepted alive Link to Nucleotide Sequence:NM_001017441.2Link to Protein Sequence:NP_001017441.2Re-query CCDS DB by Nucleotide ID:NM_001017441Re-query CCDS DB by Protein ID:NP_001017441Link to BLAST:NP_001017441.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017441.2 192 Q7TSD4-5 192 100% 0 0

Chromosomal Locations for CCDS 23874.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 61174412 61174455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61175731 61175978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61179347 61179505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61180315 61180442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGACTACAGAGGTGAACCAGCTGTCTGAGCATCCTCTAGTGAGTCCAAAGGCAGAGCCCCAGCCAGAGA
CGAAGCCGGAGAACCTTCCAAGGAGCCACGGGGATGTTGGGCTCCAGAAAGAGACTGTGGTCCCAGGCAT
TGTGGATTTCGAGCTGATCCATGAGGAGCTGAAGACCACAAAGCCCCAAACATCACAACCAACACCCAGT
GCCTACCGCTTTGGACGCCTAAGCCACCATTCCTTCTTCTCGAGGCACCACCCCCAACCACAGCGAGTGA
CTCATATCCAAGATATCGCTGGGAAGCCTGTCTGCGTGGTCAGGGACGAGTTCTCTCTGTCGGCCTTGAC
TCAGCCCACATTCTTATCCCGCTGTCTGATGGGGATGCCCACCATCTCTGTCCCCATTGGGGATCCACAG
TCCAATCGGAACCCCCAGCTTTCTACTTCTGACACCTGGAGGAAGAAACTGAAGGACCTGGCTTCCCGAG
TGACTGTCTTCACTAAGGAAATCCAGCCAAAGCCCGATGAGGTTGGTGTTGCACAAAGAATGGAGCCTAG
AAAAAAAAGGCCTTCTTAA

Translation (192 aa):
MTTEVNQLSEHPLVSPKAEPQPETKPENLPRSHGDVGLQKETVVPGIVDFELIHEELKTTKPQTSQPTPS
AYRFGRLSHHSFFSRHHPQPQRVTHIQDIAGKPVCVVRDEFSLSALTQPTFLSRCLMGMPTISVPIGDPQ
SNRNPQLSTSDTWRKKLKDLASRVTVFTKEIQPKPDEVGVAQRMEPRKKRPS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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