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Report for CCDS23965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23965.1 Public Mus musculus 10 Pdxk 23 108 98 CCDS HistoryNCBI Gene:216134Re-query CCDS DB by CCDS ID:23965.1Re-query CCDS DB by GeneID:216134See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23965.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041616.14 ENSMUSP00000038540.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041616.14Link to Ensembl Protein Viewer:ENSMUSP00000038540.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000041616Re-query CCDS DB by Protein ID:ENSMUSP00000038540
Original member Current member NCBI NM_172134.2 NP_742146.1 Accepted alive Link to Nucleotide Sequence:NM_172134.2Link to Protein Sequence:NP_742146.1Re-query CCDS DB by Nucleotide ID:NM_172134Re-query CCDS DB by Protein ID:NP_742146Link to BLAST:NP_742146.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_742146.1 312 Q8K183 312 100% 0 0

Chromosomal Locations for CCDS 23965.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78440801 78440913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78441137 78441203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78443781 78443917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78444983 78445094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78446950 78446995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78447895 78447980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78449230 78449276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78450283 78450366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78451479 78451583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78453474 78453528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78464761 78464847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGAGGGCGAATGCCGGGTGCTCTCCATCCAGAGCCATGTTGTCCGTGGCTACGTGGGTAACAGAGCGG
CCATGTTCCCTCTGCAGGTTTTGGGATTTGAGGTTGATGCCGTGAACTCTGTGCAGTTTTCAAACCACAC
AGGCTACGCCCATTGGAAGGGCCAGGTGCTGAAGTCCCAGGAACTTCATGAGCTGTACGAGGGTCTCAAG
GTGAACGATGTCAATAAGTATGACTACGTGCTCACTGGTTACACGAGAGACAAGTCTTTCCTGGCCATGG
TGGTGGACATTGTGCGGGAGCTGAAGCAACAGAACTCTCGCCTTGTGTATGTGTGTGACCCTGTGATGGG
CGACAAGTGGAATGGGGAAGGCTCCATGTACGTTCCCCAGGACCTCCTCCCCGTGTACAGGGACAAAGTG
GTACCCGTGGCTGACATCATCACTCCCAACCAGTTTGAGGCTGAGTTGCTGAGTGGCAGAAAAATCCACA
GCCAAGAAGAAGCCTTCGAGGTGATGGACATGCTGCACTGTATGGGTCCCGACACTGTGGTCATCACCAG
CTCTGACCTGCCCTCCTCACAGGGCAGCGACTACCTGATCGCGCTGGGTAGCCAGAGGATGCGGAAACCT
GACGGCTCCACGGTGACCCAGCGCATCCGGATGGAGATGCGCAAAGTGGAAGCTGTCTTCGTGGGCACCG
GGGACCTCTTCGCTGCCATGCTTCTGGCGTGGACACACAAGCACCCGGACAATCTCAAGGTGGCCTGTGA
GAAAACCGTGTCTGCCATGCAGCACGTCCTACAGAGGACCATCCGGTGTGCAAAAGCTGAAGCAGGAGAA
GGACAGAAGCCCAGCCCCGCTCAGCTGGAGCTGAGGATGGTCCAGAGCAAAAGGGACATCGAGGACCCCG
AGATCGTCGTGCAGGCCACAGTGCTGTGA

Translation (312 aa):
MEGECRVLSIQSHVVRGYVGNRAAMFPLQVLGFEVDAVNSVQFSNHTGYAHWKGQVLKSQELHELYEGLK
VNDVNKYDYVLTGYTRDKSFLAMVVDIVRELKQQNSRLVYVCDPVMGDKWNGEGSMYVPQDLLPVYRDKV
VPVADIITPNQFEAELLSGRKIHSQEEAFEVMDMLHCMGPDTVVITSSDLPSSQGSDYLIALGSQRMRKP
DGSTVTQRIRMEMRKVEAVFVGTGDLFAAMLLAWTHKHPDNLKVACEKTVSAMQHVLQRTIRCAKAEAGE
GQKPSPAQLELRMVQSKRDIEDPEIVVQATVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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