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Report for CCDS23999.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23999.1 Public Mus musculus 10 Arid3a 23 108 98 CCDS HistoryNCBI Gene:13496Re-query CCDS DB by CCDS ID:23999.1Re-query CCDS DB by GeneID:13496See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23999.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019708.11 ENSMUSP00000019708.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019708.11Link to Ensembl Protein Viewer:ENSMUSP00000019708.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000019708Re-query CCDS DB by Protein ID:ENSMUSP00000019708
Original member Current member EBI ENSMUST00000105376.1 ENSMUSP00000101015.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105376.1Link to Ensembl Protein Viewer:ENSMUSP00000101015.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105376Re-query CCDS DB by Protein ID:ENSMUSP00000101015
Original member Current member NCBI NM_001288625.1 NP_001275554.1 Accepted alive Link to Nucleotide Sequence:NM_001288625.1Link to Protein Sequence:NP_001275554.1Re-query CCDS DB by Nucleotide ID:NM_001288625Re-query CCDS DB by Protein ID:NP_001275554Link to BLAST:NP_001275554.1
Original member Current member NCBI NM_007880.4 NP_031906.1 Accepted alive Link to Nucleotide Sequence:NM_007880.4Link to Protein Sequence:NP_031906.1Re-query CCDS DB by Nucleotide ID:NM_007880Re-query CCDS DB by Protein ID:NP_031906Link to BLAST:NP_031906.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001275554.1 601 Q62431 601 100% 0 0
NP_031906.1 601 Q62431 601 100% 0 0

Chromosomal Locations for CCDS 23999.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79930894 79931288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79931766 79932078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79946485 79946557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79948860 79949043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79949365 79949612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79950628 79950924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79951248 79951346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79951740 79951936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1806 nt):
ATGAAGCTGCAGGCTGTGATGGAGACTCTCATTCAGAGGCAGCAGCGTGCCCGGCAGGAACTGGAGGCTC
GGCAGGCTCCACCACCCCCACCACCTGAGCCCACTGGAGTCCGGGCACGGACCACCATGACAGATGAGGA
CAGGGAGCCTGAGAATGCCCGGATGCATAGGACTCAGATGGCCGCACTGGCTGCCATGCGAGCTGCTGCT
GCCGGCTTGGGACATCCGTCCTCTCCCGGGGGCTCTGAGGATGGGCCTCCCATCTCTGGGGATGAAGACA
CAGCCCGGGAAGGGACTCTGAGTTCACCTGCCCTGCATGGAAGTGTCCTGGAGGGAGCAGGACACGCTGA
GGGAGATAGGCATTTGATGGACGTGGGCTCTGATGATGATGACACGAAGTCCAAGTGGGAAGAGCAAGAG
CTGGAAGAACTGGGGGAGGAGGAAGAGGAGGAGGAAGAGGAAGATGACTTTGAAGAAGAGGAGGAGGAAG
AAGAAGGCCTGGGCCCCCCAGAGTCTGCCAGCCTGGGCACTGCAGGCCTGTTCACCCGCAAGGCCCCGCC
CGCCCAGGCTTTCCGTGGAGACGGTGGTCCCAGGATGCTGAGTGGCCCTGAGCGTCTGGGACCTGGCCCA
GCCCACCCCAGTCATATGGCATCCCAGATGCCACCACCGGACCATGGGGACTGGACCTTTGAGGAGCAGT
TCAAACAGCTCTATGAACTGGATGCGGACCCCAAGAGGAAAGAGTTCCTGGATGACCTTTTCAGCTTCAT
GCAGAAGCGGGGCACTCCAGTGAACCGGATCCCCATCATGGCGAAGCAGGTCCTCGACCTGTTCATGTTG
TATGTGCTGGTGACCGAGAAGGGCGGCCTGGTAGAGGTTATCAACAAGAAACTGTGGAGGGAGATCACCA
AGGGGCTCAACCTGCCTACCTCCATCACCAGTGCTGCCTTCACACTTCGGACACAGTACATGAAGTATCT
TTACCCCTATGAGTGTGAGAGGCGAGGCCTGAGCAGCCCCAACGAGCTCCAGGCCGCCATAGACAGCAAT
CGCAGGGAGGGCAGGCGCCAGAGCTTCGGTGGCTCACTCTTTGCCTACTCACCCAGTGGAGCCCACAGCA
TGCTGCCCTCACCCAAGCTACCGGTGACTCCCCTGGGCCTCGCTGCCAGCACCAATGGCAGTTCCATCAC
CCCAGCGCCCAAGATCAAGAAAGAGGAAGACTCGGCCATCCCCATCACAGTCCCAGGCCGCCTACCTGTA
TCTTTGGCAGGCCACCCTGTTGTCGCAGCCCAGGCTGCGGCGGTGCAAGCTGCGGCAGCCCAAGCAGCCG
TTGCGGCCCAGGCAGCCGCCCTGGAGCAACTCCGGGAGAAGCTGGAATCCACAGAGCCTCCAGAAAAGAA
GATGGCCCTAGTGGCCGATGAGCAACAGCGACTCATGCAGCGAGCTGTGCAGCAGAGCTTCCTGGCCATG
ACAGCCCAGCTGCCCATGAACATCCGCATCAACAGCCAAGCCTCTGAGAGCCGCCAGGACTCAGCCGTGA
GTCTCACCAGTGCCAACGGGAGCAACAGTATTAGCATGTCCGTGGAGATGAATGGTATTGTATACACAGG
TGTGTTGTTCGCTCAGCCACCACCTCCTACAGCACCTTCCGCCCCCGGCAAAGGGGGCGTCAGCAGCATC
GGTACCAACACCACCACGGGCAGCCGGACAGGAGCCAGTGGCAGCACTGTCAGCGGCGGCCAGGTGGGGC
TGCCGGGGGTGTCTACACCCACCATGTCTTCTACCTCAAACAACTCCTTGCCTTAA

Translation (601 aa):
MKLQAVMETLIQRQQRARQELEARQAPPPPPPEPTGVRARTTMTDEDREPENARMHRTQMAALAAMRAAA
AGLGHPSSPGGSEDGPPISGDEDTAREGTLSSPALHGSVLEGAGHAEGDRHLMDVGSDDDDTKSKWEEQE
LEELGEEEEEEEEEDDFEEEEEEEEGLGPPESASLGTAGLFTRKAPPAQAFRGDGGPRMLSGPERLGPGP
AHPSHMASQMPPPDHGDWTFEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFML
YVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECERRGLSSPNELQAAIDSN
RREGRRQSFGGSLFAYSPSGAHSMLPSPKLPVTPLGLAASTNGSSITPAPKIKKEEDSAIPITVPGRLPV
SLAGHPVVAAQAAAVQAAAAQAAVAAQAAALEQLREKLESTEPPEKKMALVADEQQRLMQRAVQQSFLAM
TAQLPMNIRINSQASESRQDSAVSLTSANGSNSISMSVEMNGIVYTGVLFAQPPPPTAPSAPGKGGVSSI
GTNTTTGSRTGASGSTVSGGQVGLPGVSTPTMSSTSNNSLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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