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Report for CCDS24011.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24011.1 Public Mus musculus 10 Midn 23 108 98 CCDS HistoryNCBI Gene:59090Re-query CCDS DB by CCDS ID:24011.1Re-query CCDS DB by GeneID:59090See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24011.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042057.11 ENSMUSP00000046967.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042057.11Link to Ensembl Protein Viewer:ENSMUSP00000046967.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000042057Re-query CCDS DB by Protein ID:ENSMUSP00000046967
Original member Current member NCBI NM_021565.2 NP_067540.1 Accepted alive Link to Nucleotide Sequence:NM_021565.2Link to Protein Sequence:NP_067540.1Re-query CCDS DB by Nucleotide ID:NM_021565Re-query CCDS DB by Protein ID:NP_067540Link to BLAST:NP_067540.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067540.1 508 Q3TPJ7-2 508 100% 0 0

Chromosomal Locations for CCDS 24011.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80150078 80150313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80151378 80151465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80151661 80151723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80153591 80153719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80153816 80154133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80154331 80154472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80155134 80155406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80156365 80156642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGGAGCCGCAGCCCGGCGGTGCCCGGAGCTGCCGGCGCGGGGCCCCCGGCGGCGCCTGCGAGCTGAACA
CGGCCACGGAGTCGGCCGCACCCATGAGCCTGGCGATCCACAGCACTACGGGGACCCGCTACGACCTGTC
GGTGCCCCACGACGAGACCGTGGAAGGGCTGCGCAAAAGGTTGTCCCAACGCCTCAAAGTACCCAAGGAA
CGCCTGGCGCTGCTTCACAAAGACACCCGGCTCAGTTCGGGGAAGCTGCAGGAATTCGGCGTGGGGGATG
GGAGCAAGTTGACGCTCGTGCCCACGGTGGAAGCTGGCCTCATGTCCCAGGCCTCGAGGCCGGAACAGTC
CGTTATGCAAGCCTTGGAAAGTTTGACCGAGACCCAGCCCCCAGCGACACCCGGGCCAGGCCGGGCTGCC
GGAGGAGGCTTCCGGAAATACAGATTGATTTTATTTAAGCGTCCGTGGCACCGACAGGGACCCCAGAGCC
CAGAGAGGGGCGGCGAGAGGCCCCAGGTCAGTGACTTTCTGTCAGGCCGCTCGCCTTTGACCCTGGCCCT
GCGAGTCGGGGATCACATGATGTTTGTGCAGTTGCAACTGGCAGCCCAGCATGCCCCACTCCAGCACCGC
CATGTGCTTGCTGCTGCCGCAGCAGCAGCCGCCGCCGCCCGGGGAGACTCCAGTGTAGCCACCCCAGTGT
CTTCACCCTGTAGGCCGGTGTCCAGTGCCGCCCGTGTACCCCCAGTATCCAGCAGCCCTTCCTCACCTGT
ATCCCCCTCACCTGTCACTGCTGGCTCCTTCCGATCCCACGCAGCCTCCACAACCTGTCCTGAGCAGATG
GACTGTTCTCCACCCGCCAGCAGCAGCTCCACATCCACCCCAGGCAGCAGCCCCACCCCTCGATCCCGCA
AACCTGGTGCGGTCATTGAGAGCTTCGTGAACCATGCTCCAGGGGTCTTCTCAGGGACCTTCTCTGGCAC
ACTACACCCCAACTGCCAGGACAGCAGTGGGCGGCCTCGGCGTGACATCGGCACCATTCTGCAGATACTC
AATGACCTCCTAAGTGCCACGAGGCACTACCAGGGCATGCCACCCTCACTGACCCAGCTCCGCTGCCATG
CTCAGTGCTCACCTGCCTCACCAGCCCCTGACCTCACCCCCAAAACTACCTCCTGTGAAAAGCTGGCAGC
CACCTCCTCCACATCCCTGCTCCAGGGCCAGAGCCAGATTCGAATGTGCAAGCCCCCTGGAGACCGTCTT
CGACAGACAGAGAACCGTGCCACACGTTGCAAAGTGGAACGCCTCCAGCTCCTGTTGCAGCAGAAGCGCC
TGCGCAGGAAGGCACGGCGGGACGCCCGGGGGCCTTACCACTGGACCCCCAGCCGCAAAGCTGGCCGTAG
CGACAGCAGCAGCAGTGGGGGTGGAGGTGGCCCCAGCGAGGCCACAGGCTTGGGCCTCGACTTCGAGGAC
TCCGTTTGGAAGCCTGAAGTCAACCCGGACATCCAGTCCGAGTTTGTGGTGGCTTAA

Translation (508 aa):
MEPQPGGARSCRRGAPGGACELNTATESAAPMSLAIHSTTGTRYDLSVPHDETVEGLRKRLSQRLKVPKE
RLALLHKDTRLSSGKLQEFGVGDGSKLTLVPTVEAGLMSQASRPEQSVMQALESLTETQPPATPGPGRAA
GGGFRKYRLILFKRPWHRQGPQSPERGGERPQVSDFLSGRSPLTLALRVGDHMMFVQLQLAAQHAPLQHR
HVLAAAAAAAAAARGDSSVATPVSSPCRPVSSAARVPPVSSSPSSPVSPSPVTAGSFRSHAASTTCPEQM
DCSPPASSSSTSTPGSSPTPRSRKPGAVIESFVNHAPGVFSGTFSGTLHPNCQDSSGRPRRDIGTILQIL
NDLLSATRHYQGMPPSLTQLRCHAQCSPASPAPDLTPKTTSCEKLAATSSTSLLQGQSQIRMCKPPGDRL
RQTENRATRCKVERLQLLLQQKRLRRKARRDARGPYHWTPSRKAGRSDSSSSGGGGGPSEATGLGLDFED
SVWKPEVNPDIQSEFVVA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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