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Report for CCDS24018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24018.1 Public Mus musculus 10 Pcsk4 23 108 98 CCDS HistoryNCBI Gene:18551Re-query CCDS DB by CCDS ID:24018.1Re-query CCDS DB by GeneID:18551See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24018.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020340.14 ENSMUSP00000020340.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020340.14Link to Ensembl Protein Viewer:ENSMUSP00000020340.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020340Re-query CCDS DB by Protein ID:ENSMUSP00000020340
Original member NCBI NM_008793.2 NP_032819.1 Updated not alive Link to Nucleotide Sequence:NM_008793.2Link to Protein Sequence:NP_032819.1Re-query CCDS DB by Nucleotide ID:NM_008793Re-query CCDS DB by Protein ID:NP_032819
Current member NCBI NM_008793.3 NP_032819.1 Accepted alive Link to Nucleotide Sequence:NM_008793.3Link to Protein Sequence:NP_032819.1Re-query CCDS DB by Nucleotide ID:NM_008793Re-query CCDS DB by Protein ID:NP_032819Link to BLAST:NP_032819.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032819.1 655 P29121-1 655 100% 0 0

Chromosomal Locations for CCDS 24018.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80321806 80321951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80322081 80322209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80322724 80322848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80322990 80323175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80323483 80323600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80323673 80323776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80323854 80323954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80324932 80325144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80325233 80325405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80325583 80325671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80325773 80325849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80325950 80326078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80326160 80326252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80328946 80329050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80329271 80329450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1968 nt):
ATGCGGCCCTCCCAGACAGAGCTGTGGCTGGGTCTGACTTTGACTTTGGCCCTCCTGGCTGTGAGGTGGG
CCTCAGCCCAGGCCCCCATCTATGTCAGCAGCTGGGCAGTGCGGGTGACCAAAGGTTACCAGGAAGCTGA
GCGCCTGGCCCGTAAATTTGGCTTCGTCAACCTGGGACAGATCTTCCCTGACGACCAGTATTTCCATCTG
CGGCACCGGGGTGTGGCCCAGCAGTCCCTGACTCCACACTGGGGCCATCGTCTACGACTGAAGAAAGATC
CCAAGGTGCGCTGGTTTGAGCAGCAGACTTTGAGGCGCCGGGTGAAACGCTCCCTGGTGGTGCCCACAGA
CCCCTGGTTTTCCAAGCAGTGGTACATGAACAAGGAGATACAACAAGATCTCAACATCCTAAAGGCTTGG
AACCAGGGACTGACCGGCCGGGGAGTGGTGATTTCCATCTTGGACGATGGCATTGAGAAAGACCACCCGG
ACCTCTGGGCTAATTATGACCCTCTGGCCAGCTATGACTTCAACGACTATGACCCAGACCCCCAGCCTCG
CTACACACCCAACGATGAGAACCGACATGGAACGCGCTGTGCTGGGGAGGTGTCTGCCACAGCTAACAAC
GGTTTCTGTGGTGCCGGTGTGGCCTTCAATGCTAGAATTGGAGGCGTGCGCATGTTGGATGGAGCCATCA
CTGACATCGTGGAGGCTCAGTCCCTCAGCCTGCAGCCGCAACACATACACATCTATAGCGCCAGCTGGGG
CCCGGAGGATGATGGTCGCACGGTGGACGGACCTGGCCTCCTCACACAGGAGGCCTTCAGGCGTGGTGTA
ACCAAGGGCCGCCAAGGGCTGGGTACACTGTTCATCTGGGCCTCGGGAAACGGTGGCCTCCATTACGACA
ACTGCAATTGTGACGGCTACACCAACAGCATCCACACACTGTCAGTGGGCAGCACCACGCGGCAGGGTCG
AGTGCCCTGGTACAGCGAGGCCTGTGCCTCCACGTTTACCACCACCTTCAGCAGCGGTGTGGTCACCGAC
CCACAGATCGTCACCACGGACCTGCACCACCAGTGCACCGACAAGCACACGGGCACCTCGGCATCTGCCC
CGCTGGCTGCTGGCATGATCGCCCTGGCCCTGGAGGCCAACCCGCTCCTGACCTGGAGGGACCTACAGCA
CCTGGTGGTCCGCGCGTCCAGGCCGGCGCAGCTGCAGGCGGAGGACTGGAGGATCAACGGCGTGGGGCGC
CAAGTGAGCCACCATTATGGCTATGGGCTGCTGGACGCGGGGTTGCTGGTGGACCTGGCTCGCGTGTGGC
TGCCCACTAAGCCTCAGAAGAAATGTGCCATTCGGGTGGTGCACACCCCCACCCCCATCCTGCCTCGGAT
GCTGGTGCCGAAGAACGTGACCGCGTGCTCAGATGGCTCGCGCCGCCGCCTCATCCGCTCGCTCGAGCAC
GTGCAGGTCCAGCTTTCGCTCTCCTACAGCCGCCGCGGGGACCTGGAGATCTTCCTCACCAGCCCCATGG
GCACGCGCTCCACGCTCGTGGCCATCAGACCGTTGGATATCAGCGGCCAAGGCTACAACAACTGGATCTT
CATGTCCACTCACTACTGGGATGAGGACCCGCAGGGCCTGTGGACCCTGGGCCTGGAGAATAAGGGCTAC
TATTTTAACACAGGAACTCTGTACTACTACACCCTGCTGCTGTATGGGACGGCCGAGGACATGACAGCAC
GGCCCCAGGCCCCCCAGGTGACCAGCCGCGCGCGCGCATGTGTGCAGAGGGACACAGAGGGGCTGTGCCA
GGAAAGTCACAGTCCCCTCTCCATCCTGGCAGGACTCTGCCTCATCTCCAGCCAGCAGTGGTGGTGGCTC
TACAGCCACCCACAGCAGCCAGTGACCGAAGGACAGGCCAGCTGTCACCCTCCTGTTACACCTGCTGCAG
CAGCCTGA

Translation (655 aa):
MRPSQTELWLGLTLTLALLAVRWASAQAPIYVSSWAVRVTKGYQEAERLARKFGFVNLGQIFPDDQYFHL
RHRGVAQQSLTPHWGHRLRLKKDPKVRWFEQQTLRRRVKRSLVVPTDPWFSKQWYMNKEIQQDLNILKAW
NQGLTGRGVVISILDDGIEKDHPDLWANYDPLASYDFNDYDPDPQPRYTPNDENRHGTRCAGEVSATANN
GFCGAGVAFNARIGGVRMLDGAITDIVEAQSLSLQPQHIHIYSASWGPEDDGRTVDGPGLLTQEAFRRGV
TKGRQGLGTLFIWASGNGGLHYDNCNCDGYTNSIHTLSVGSTTRQGRVPWYSEACASTFTTTFSSGVVTD
PQIVTTDLHHQCTDKHTGTSASAPLAAGMIALALEANPLLTWRDLQHLVVRASRPAQLQAEDWRINGVGR
QVSHHYGYGLLDAGLLVDLARVWLPTKPQKKCAIRVVHTPTPILPRMLVPKNVTACSDGSRRRLIRSLEH
VQVQLSLSYSRRGDLEIFLTSPMGTRSTLVAIRPLDISGQGYNNWIFMSTHYWDEDPQGLWTLGLENKGY
YFNTGTLYYYTLLLYGTAEDMTARPQAPQVTSRARACVQRDTEGLCQESHSPLSILAGLCLISSQQWWWL
YSHPQQPVTEGQASCHPPVTPAAAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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