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Report for CCDS24058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24058.1 Public Mus musculus 10 Nfic 23 108 98 CCDS HistoryNCBI Gene:18029Re-query CCDS DB by CCDS ID:24058.1Re-query CCDS DB by GeneID:18029See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24058.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020461.14 ENSMUSP00000020461.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020461.14Link to Ensembl Protein Viewer:ENSMUSP00000020461.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020461Re-query CCDS DB by Protein ID:ENSMUSP00000020461
Original member Current member NCBI NM_008688.3 NP_032714.1 Accepted alive Link to Nucleotide Sequence:NM_008688.3Link to Protein Sequence:NP_032714.1Re-query CCDS DB by Nucleotide ID:NM_008688Re-query CCDS DB by Protein ID:NP_032714Link to BLAST:NP_032714.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032714.1 439 P70255-1 439 100% 0 0

Chromosomal Locations for CCDS 24058.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81403378 81403428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81404824 81405008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81406089 81406214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81407555 81407679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81408106 81408229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81408335 81408409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81409611 81409682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81420267 81420798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81427076 81427105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGTATTCCTCCCCGCTCTGCCTGACCCAGGATGAGTTCCACCCGTTCATCGAGGCGCTGCTGCCGCATG
TGCGCGCCTTCGCCTACACCTGGTTCAACCTGCAGGCGCGCAAGCGCAAGTACTTCAAGAAGCACGAGAA
GCGCATGTCCAAGGACGAGGAGCGCGCGGTGAAGGATGAGCTGCTGGGTGAAAAGGCCGAAGTGAAGCAG
AAGTGGGCGTCGCGGCTGCTGGCCAAGCTGCGCAAGGACATCCGGCCCGAGTGCCGTGAAGACTTCGTAC
TGGCTGTGACTGGCAAGAAGGCGCCAGGCTGTGTGCTGTCCAACCCGGACCAGAAGGGCAAGATGCGGCG
CATCGACTGCCTGCGCCAGGCCGACAAAGTGTGGCGTCTGGACCTGGTCATGGTCATCCTGTTCAAGGGC
ATCCCACTGGAGAGCACAGATGGTGAGCGGCTGGTGAAGGCGGCTGCCTGTGCGCACCCGGTGCTGTGTG
TGCAGCCGCACCATATTGGCGTGGCCGTCAAGGAGCTGGACCTGTACCTGGCCTACTTTGTGCGGGAGCG
CGATGCGGAGCAGAGCAGCAGCCCCCGGACAGGTGTGGGCTCAGACCAGGAGGACAGCAAGCCCATAACG
CTGGACACCACAGACTTCCAGGAGAGCTTTGTCACGTCAGGTGTGTTCAGTGTCACGGAGCTGATCCAAG
TGTCTCGGACACCTGTGGTGACCGGAACCGGACCCAACTTCTCACTGGGAGAGCTGCAGGGTCACCTGGC
ATATGACCTGAACCCGGCCAGCGCCGGCATGAGAAGGACTCTACCCAGCACCTCCTCCAGTGGGAGCAAG
CGGCACAAGTCGGGCTCGATGGAAGAGGACGTGGACACGAGCCCCGGCGGCGACTACTACACGTCGCCCA
ACTCACCCACGAGTAGCAGCCGCAACTGGACGGAAGACATAGAAGGAGGCATCTCATCCCCGGTGAAGAA
GACAGAGATGGACAAATCTCCATTCAACAGCCCGTCCCCCCAGGACTCCCCCCGGCTCTCCAGCTTCACA
CAACACCACAGGCCGGTCATCGCGGTACACAGTGGCATCGCGCGGAGCCCCCACCCGACCTCGGCCCTGC
ACTTCCCTGCCACGCCCATCCTGCCACAGACAGCCTCCACCTACTTCCCCCATACGGCCATCCGGTACCC
GCCACATCTCAACCCCCAGGACCCGCTCAAGGATCTGGTGTCCCTGGCCTGTGACCCGGCCACCCAGCAG
CCTGGACCGCCTGCTCTCCGCCCGACACGTCCCCTGCAAACAGTCCCTTTGTGGGATTAG

Translation (439 aa):
MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVKQ
KWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKG
IPLESTDGERLVKAAACAHPVLCVQPHHIGVAVKELDLYLAYFVRERDAEQSSSPRTGVGSDQEDSKPIT
LDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLGELQGHLAYDLNPASAGMRRTLPSTSSSGSK
RHKSGSMEEDVDTSPGGDYYTSPNSPTSSSRNWTEDIEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFT
QHHRPVIAVHSGIARSPHPTSALHFPATPILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPATQQ
PGPPALRPTRPLQTVPLWD


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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