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Report for CCDS24108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24108.1 Public Mus musculus 10 Washc3 23 108 98 CCDS HistoryNCBI Gene:67282Re-query CCDS DB by CCDS ID:24108.1Re-query CCDS DB by GeneID:67282See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24108.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020248.15 ENSMUSP00000020248.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020248.15Link to Ensembl Protein Viewer:ENSMUSP00000020248.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020248Re-query CCDS DB by Protein ID:ENSMUSP00000020248
Original member NCBI NM_026070.3 NP_080346.1 Updated not alive Link to Nucleotide Sequence:NM_026070.3Link to Protein Sequence:NP_080346.1Re-query CCDS DB by Nucleotide ID:NM_026070Re-query CCDS DB by Protein ID:NP_080346
Current member NCBI NM_026070.4 NP_080346.1 Accepted alive Link to Nucleotide Sequence:NM_026070.4Link to Protein Sequence:NP_080346.1Re-query CCDS DB by Nucleotide ID:NM_026070Re-query CCDS DB by Protein ID:NP_080346Link to BLAST:NP_080346.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080346.1 194 Q9CR27 194 100% 0 0

Chromosomal Locations for CCDS 24108.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88201242 88201292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88201812 88201910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88213647 88213712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88215967 88216074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88219250 88219360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88234394 88234458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88245756 88245840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGGATGAGGATGGGCTTCCTCTCATGGGGTCAGGCATAGACCTGACCAAGGTGCCAGCTATTCAACAGA
AAAGAACCGTGGCCTTTCTAAACCAGTTTGTGGTGCACACTGTGCAGTTTCTCAACCGGTTTTCCGCAGT
TTGTGAGGAGAAACTGGCAGACCTTTCTCTCCGGATTCAGCAAATTGAAACAACTCTCAATATTTTAGAT
GCAAAGCTGTCATCTATCCCAGGCCTAGAGGACGTCACAGTTGAAGTGTCTCCTTTAAATGTCACTGCTG
TCACAAACGGATCACATTCTGAAACCACTTCGGAGCAAACGCAGCAGAATAGCACGCAAGACTCTGGAGC
ACAGGAGAGTGAAGCGCCATCAGAAAATGTCCTGACCGTAGCCAAGGATCCACGGTATGCCAGATACCTC
AAGATGGTTCAAGTGGGTGTTCCAGTGATGGCAATCAGAGACAAGATGATCTCAGAAGGACTGGACCCGG
AGCTACTGGAGAAGCCAGATGCCCCGGTGCCAAATGGCGAAAGCGAAAGAGCCGTAGAAGAAAGTTCAGA
TAGTGACTCTTCCTTCAGTGACTAA

Translation (194 aa):
MDEDGLPLMGSGIDLTKVPAIQQKRTVAFLNQFVVHTVQFLNRFSAVCEEKLADLSLRIQQIETTLNILD
AKLSSIPGLEDVTVEVSPLNVTAVTNGSHSETTSEQTQQNSTQDSGAQESEAPSENVLTVAKDPRYARYL
KMVQVGVPVMAIRDKMISEGLDPELLEKPDAPVPNGESERAVEESSDSDSSFSD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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