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Report for CCDS24124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24124.1 Public Mus musculus 10 Elk3 23 108 98 CCDS HistoryNCBI Gene:13713Re-query CCDS DB by CCDS ID:24124.1Re-query CCDS DB by GeneID:13713See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24124.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008542.11 ENSMUSP00000008542.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008542.11Link to Ensembl Protein Viewer:ENSMUSP00000008542.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000008542Re-query CCDS DB by Protein ID:ENSMUSP00000008542
Original member Current member NCBI NM_013508.2 NP_038536.2 Accepted alive Link to Nucleotide Sequence:NM_013508.2Link to Protein Sequence:NP_038536.2Re-query CCDS DB by Nucleotide ID:NM_013508Re-query CCDS DB by Protein ID:NP_038536Link to BLAST:NP_038536.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038536.2 409 P41971 409 100% 0 0

Chromosomal Locations for CCDS 24124.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 93250010 93250108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93254689 93254811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93264880 93265680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93284769 93284975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGGAGAGTGCAATCACGCTGTGGCAGTTCCTCTTGCACTTGCTGCTGGACCAGAAACATGAGCACCTCA
TCTGCTGGACATCGAACGATGGCGAGTTCAAGCTCCTCAAGGCGGAAGAAGTGGCCAAGCTGTGGGGCCT
CCGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCGCTGAGATACTATTACGACAAGAAC
ATCATCAAGAAAGTGATCGGGCAGAAGTTTGTGTACAAGTTCGTCTCTTTCCCGGATATCCTGAAAATGG
ATCCTCACGCGGTAGAGATCAGCCGGGAGAGCCTCCTGCTGCAGGACGGCGACTGTAAGGTGTCCCCGGA
AGGCCGAGAGGTCCACAGGCACGGCTTGTCCTCTCTCAAAAGTGCCAGCCGCAACGAGTACCTCCACTCG
GGCCTCTACTCGTCCTTCACCATCAACTCCCTGCAGAACGCTCCAGAGGCCTTCAAGGCCATCAAGACGG
AGAAGCTGGAGGAGCCCTGTGATGACAGTCCCCCTGTGGAAGAAGTCAGGACTGTGATCAGGTTTGTGAC
CAATAAAACCGACAAGCACATCACCAGGCCTGTGGTGTCCCTGCCTTCCACATCCGAGACCGCTGCGGCA
GCGGCATCCGCTTTCCTGGCCTCGTCTGTCTCAGCCAAGATCTCCTCTTTAATGTTGCCAAATGCTGCCA
GCATTTCGTCTGCGTCACCCTCTTCATCTCGGTCCCCATCCCTGTCCCCCGACTCTCCCCTCCCTTCTGA
ACACAGAAGCCTCTTCCTGGAGGCAGCCTGCCATGACTCGGATTCTCTGGAGCCCCTGAATCTGTCATCG
GGCTCCAAAACCAAGTCTCCATCTCTTCCCCCAAAAGGCAAAAAACCCAAAGGCTTGGAAATCTCTGCAC
CCCAACTGTTGCTCTCCGGCACCGACATCGGCTCCATCGCCCTCAACAGCCCAGCCCTCCCCTCAGGATC
CCTCACTCCAGCCTTCTTCACCGCACAGACACCAAGTGGACTGTTTCTGGCCTCGAGTCCGCTGCTGCCC
AGCATACACTTCTGGAGCAGCCTTAGTCCTGTCGCCCCACTGAGTCCTGCCAGGCTGCAAGGGCCGAACA
CACTTTTCCAGTTCCCCACACTGCTCAACGGTCACATGCCGGTGCCGCTCCCCAGTCTGGACAGAGCTCC
ATCCCCAGTTCTGCTGTCCCCCAGCTCTCAGAAATCCTGA

Translation (409 aa):
MESAITLWQFLLHLLLDQKHEHLICWTSNDGEFKLLKAEEVAKLWGLRKNKTNMNYDKLSRALRYYYDKN
IIKKVIGQKFVYKFVSFPDILKMDPHAVEISRESLLLQDGDCKVSPEGREVHRHGLSSLKSASRNEYLHS
GLYSSFTINSLQNAPEAFKAIKTEKLEEPCDDSPPVEEVRTVIRFVTNKTDKHITRPVVSLPSTSETAAA
AASAFLASSVSAKISSLMLPNAASISSASPSSSRSPSLSPDSPLPSEHRSLFLEAACHDSDSLEPLNLSS
GSKTKSPSLPPKGKKPKGLEISAPQLLLSGTDIGSIALNSPALPSGSLTPAFFTAQTPSGLFLASSPLLP
SIHFWSSLSPVAPLSPARLQGPNTLFQFPTLLNGHMPVPLPSLDRAPSPVLLSPSSQKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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