CCDS Report for Consensus CDS

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Report for CCDS24180.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
24180.1	Public	Mus musculus	10	Lgr5	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24180.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000020350.14	ENSMUSP00000020350.8	Accepted	alive
		NCBI	NM_010195.2	NP_034325.2	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_034325.2	907	Q9Z1P4	907	100%	0	0

Chromosomal Locations for CCDS 24180.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)

Genome Browser links:

Chromosome	Start	Stop
10	115452014	115453101
10	115454446	115454529
10	115456648	115456793
10	115457757	115457882
10	115458641	115458712
10	115460813	115460884
10	115462702	115462767
10	115466130	115466201
10	115466342	115466410
10	115466556	115466627
10	115470564	115470635
10	115471967	115472035
10	115475174	115475245
10	115478387	115478602
10	115495170	115495241
10	115502367	115502438
10	115520606	115520677
10	115587282	115587493

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2724 nt):
ATGGACACCTCCTGCGTCCACATGCTCCTGTCCTTGCTGGCGCTGCTGCAGTTGGTGGCCGCCGGCAGCT CACCGGGACCAGATGCGATACCGCGGGGCTGCCCATCACACTGTCACTGTGAGCTGGATGGCAGGATGCT GCTCAGGGTGGACTGCTCGGACCTGGGGCTCTCGGAGCTGCCCTCCAACCTCAGCGTCTTCACCTCCTAC CTGGACCTCAGTATGAACAACATCAGTCAGCTACCCGCCAGTCTCCTACATCGCCTCTGCTTCCTAGAAG AGTTACGTCTTGCTGGAAATGCTTTGACACACATTCCCAAGGGAGCGTTCACGGGCCTTCACAGCCTCAA AGTGCTTATGCTGCAGAACAACCAGCTGAGACAGGTTCCGGAGGAAGCGCTACAGAATTTGAGAAGCCTT CAATCCCTGCGCCTAGATGCCAACCACATCAGCTACGTGCCACCCAGCTGTTTCAGCGGCCTGCACTCCC TGAGGCACCTGTGGCTAGATGACAATGCTCTCACAGACGTCCCTGTCCAGGCTTTCAGAAGTTTATCAGC CCTGCAAGCCATGACCTTGGCCCTGAACAAAATACACCACATAGCAGACTACGCCTTTGGAAACCTCTCC AGCCTCGTGGTTCTGCATCTCCATAATAATAGAATCCACTCCCTGGGAAAGAAATGCTTTGATGGACTCC ACAGCCTGGAGACTTTAGATTTAAATTATAATAACCTTGATGAATTCCCCACTGCAATCAAGACACTCTC CAACCTTAAGGAACTAGGATTCCACAGCAACAACATCAGGTCAATACCGGAGCGAGCGTTCGTAGGCAAC CCTTCTCTTATCACAATACACTTCTATGACAACCCCATCCAATTTGTTGGAGTATCTGCTTTTCAGCATT TGCCTGAACTAAGAACACTGACTTTGAATGGTGCCTCGCACATTACTGAATTTCCTCACTTGACAGGAAC TGCCACCCTGGAGAGTCTGACTTTAACTGGAGCAAAGATCTCATCTCTTCCCCAGGCCGTCTGTGATCAG TTACCTAATCTCCAAGTGCTAGATTTGTCTTACAACCTACTCGAAGACTTACCCAGTTTGTCAGGCTGCC AAAAACTTCAGAAAATTGACCTGAGGCATAACGAGATCTATGAAATTAAGGGCAGCACTTTTCAGCAGTT GTTTAACCTCCGATCTCTGAACTTAGCATGGAATAAAATTGCTATCATTCACCCCAATGCGTTTTCTACG TTGCCGTCTCTAATAAAGTTGGACCTATCATCCAATCTCCTGTCGTCCTTCCCTGTGACTGGGTTACATG GTTTAACTCACTTAAAATTAACAGGGAACCGAGCCTTACAGAGCCTGATACCATCTGCAAACTTCCCAGA GCTCAAGATTATAGAAATGCCATCTGCTTACCAGTGTTGTGCATTTGGGGGGTGTGAGAATGTCTATAAA ATTTCTAACCAATGGAATAAAGACGACGGCAACAGTGTGGACGACCTTCATAAGAAAGACGCTGGGTTAT TTCAAGTTCAAGATGAGCGGGACCTTGAAGATTTCCTACTTGACTTTGAGGAAGACCTGAAGGCCCTTCA CTCGGTGCAGTGCTCGCCTTCCCCAGGTCCCTTCAAGCCCTGTGAGCACCTATTTGGTAGCTGGCTGATC CGAATCGGGGTGTGGACCACGGCAGTACTGGCGCTTTCCTGCAATGCCTTGGTGGCTTTGACCGTGTTCA GAACTCCTCTGTACATCTCTTCCATAAAGCTGCTAATTGGGGTAATCGCGGTAGTGGACATTCTCATGGG GGTCTCCAGTGCTGTGCTGGCTGCCGTGGATGCATTCACTTTTGGCCGTTTTGCTCAGCACGGTGCGTGG TGGGAAGACGGAATCGGCTGCCAAATCGTTGGCTTCCTGTCCATTTTTGCTTCCGAATCGTCGATCTTCC TGCTCACTCTGGCAGCGCTGGAACGAGGTTTTTCTGTCAAGTGCTCTTCGAAGTTTGAAGTGAAAGCTCC CCTTTTTAGCCTGAGAGCGATCGTTTTGCTATGTGTCCTGTTGGCCCTGACCATTGCCACAATCCCCTTG CTAGGAGGCAGTAAGTACAATGCCTCTCCCCTCTGCCTGCCCTTGCCCTTTGGGGAGCCCAGCACCACGG GCTACATGGTGGCTCTCGTGTTGCTCAACTCTCTCTGTTTCCTCATAATGACCATTGCCTACACAAAGCT CTACTGCAGTTTGGAGAAAGGAGAGCTGGAGAATCTTTGGGATTGTTCGATGGTGAAGCACATTGCTCTG TTGCTCTTCGCCAACTGCATCCTTTACTGCCCCGTGGCTTTCTTATCCTTCTCCTCTTTGCTAAACCTCA CCTTTATCAGTCCTGACGTCATTAAATTTATACTTCTCGTGATCGTCCCACTTCCTTCCTGTCTCAACCC ACTTCTCTACATTGTCTTCAATCCCCATTTTAAGGAGGATATGGGCAGCCTGGGAAAGCATACCCGTTTC TGGATGAGATCAAAACACGCGAGTCTGCTGTCCATTAACTCGGACGATGTTGAGAAACGGTCCTGTGAGT CAACCCAAGCCTTAGTATCCTTTACCCACGCCAGCATAGCCTATGACTTGCCTTCCACTTCCGGGGCATC ACCAGCTTACCCCATGACTGAAAGCTGTCATCTCTCTTCAGTTGCATTTGTCCCATGTCTCTAG
Translation (907 aa):
MDTSCVHMLLSLLALLQLVAAGSSPGPDAIPRGCPSHCHCELDGRMLLRVDCSDLGLSELPSNLSVFTSY LDLSMNNISQLPASLLHRLCFLEELRLAGNALTHIPKGAFTGLHSLKVLMLQNNQLRQVPEEALQNLRSL QSLRLDANHISYVPPSCFSGLHSLRHLWLDDNALTDVPVQAFRSLSALQAMTLALNKIHHIADYAFGNLS SLVVLHLHNNRIHSLGKKCFDGLHSLETLDLNYNNLDEFPTAIKTLSNLKELGFHSNNIRSIPERAFVGN PSLITIHFYDNPIQFVGVSAFQHLPELRTLTLNGASHITEFPHLTGTATLESLTLTGAKISSLPQAVCDQ LPNLQVLDLSYNLLEDLPSLSGCQKLQKIDLRHNEIYEIKGSTFQQLFNLRSLNLAWNKIAIIHPNAFST LPSLIKLDLSSNLLSSFPVTGLHGLTHLKLTGNRALQSLIPSANFPELKIIEMPSAYQCCAFGGCENVYK ISNQWNKDDGNSVDDLHKKDAGLFQVQDERDLEDFLLDFEEDLKALHSVQCSPSPGPFKPCEHLFGSWLI RIGVWTTAVLALSCNALVALTVFRTPLYISSIKLLIGVIAVVDILMGVSSAVLAAVDAFTFGRFAQHGAW WEDGIGCQIVGFLSIFASESSIFLLTLAALERGFSVKCSSKFEVKAPLFSLRAIVLLCVLLALTIATIPL LGGSKYNASPLCLPLPFGEPSTTGYMVALVLLNSLCFLIMTIAYTKLYCSLEKGELENLWDCSMVKHIAL LLFANCILYCPVAFLSFSSLLNLTFISPDVIKFILLVIVPLPSCLNPLLYIVFNPHFKEDMGSLGKHTRF WMRSKHASLLSINSDDVEKRSCESTQALVSFTHASIAYDLPSTSGASPAYPMTESCHLSSVAFVPCL

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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