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Report for CCDS24272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24272.1 Public Mus musculus 10 Cnpy2 23 108 98 CCDS HistoryNCBI Gene:56530Re-query CCDS DB by CCDS ID:24272.1Re-query CCDS DB by GeneID:56530See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24272.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026446.3 ENSMUSP00000026446.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026446.3Link to Ensembl Protein Viewer:ENSMUSP00000026446.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000026446Re-query CCDS DB by Protein ID:ENSMUSP00000026446
Original member Current member EBI ENSMUST00000219037.1 ENSMUSP00000151918.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219037.1Link to Ensembl Protein Viewer:ENSMUSP00000151918.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219037Re-query CCDS DB by Protein ID:ENSMUSP00000151918
Original member NCBI NM_019953.1 NP_064337.1 Updated not alive Link to Nucleotide Sequence:NM_019953.1Link to Protein Sequence:NP_064337.1Re-query CCDS DB by Nucleotide ID:NM_019953Re-query CCDS DB by Protein ID:NP_064337
Current member NCBI NM_019953.2 NP_064337.1 Accepted alive Link to Nucleotide Sequence:NM_019953.2Link to Protein Sequence:NP_064337.1Re-query CCDS DB by Nucleotide ID:NM_019953Re-query CCDS DB by Protein ID:NP_064337Link to BLAST:NP_064337.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064337.1 182 Q9QXT0 182 100% 0 0

Chromosomal Locations for CCDS 24272.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128323355 128323442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128323584 128323699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128326064 128326267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128326577 128326673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128327018 128327061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGAAAGGCTGGGGTTGGCTAGCCCTACTTTTGGGGGTCCTGCTGGGAACTGCCTGGGCTCGAAGGAGCC
AAGATCTACACTGTGGAGCTTGCAGGGCTCTGGTGGATGAATTAGAGTGGGAAATTGCCCGCGTGGACCC
CAAGAAGACCATTCAGATGGGATCCTTCCGAATCAATCCAGATGGCAGCCAGTCAGTTGTGGAGGTACCT
TATGCCCGCTCAGAGGCCCACCTCACAGAGTTGCTTGAGGAGGTGTGTGACCGAATGAAGGAGTACGGGG
AACAGATTGACCCTTCTACCCACCGCAAGAACTACGTACGCGTCGTGAGCCGGAATGGAGAATCCAGTGA
ACTAGACTTACAGGGCATCCGAATTGACTCAGATATCAGCGGCACCCTCAAGTTTGCGTGTGAGAGCATT
GTGGAAGAATACGAGGATGAGCTTATCGAATTCTTCTCCAGAGAGGCTGACAACGTTAAAGACAAACTTT
GCAGTAAGCGGACAGATCTATGTGACCATGCCCTGCACAGATCTCACGATGAGCTATGA

Translation (182 aa):
MKGWGWLALLLGVLLGTAWARRSQDLHCGACRALVDELEWEIARVDPKKTIQMGSFRINPDGSQSVVEVP
YARSEAHLTELLEEVCDRMKEYGEQIDPSTHRKNYVRVVSRNGESSELDLQGIRIDSDISGTLKFACESI
VEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHRSHDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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