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Report for CCDS24337.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24337.1 Public Mus musculus 10 Or6c69b 23 108 98 CCDS HistoryNCBI Gene:258543Re-query CCDS DB by CCDS ID:24337.1Re-query CCDS DB by GeneID:258543See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24337.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091986.3 ENSMUSP00000089612.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091986.3Link to Ensembl Protein Viewer:ENSMUSP00000089612.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000091986Re-query CCDS DB by Protein ID:ENSMUSP00000089612
Original member Current member EBI ENSMUST00000214206.1 ENSMUSP00000149044.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214206.1Link to Ensembl Protein Viewer:ENSMUSP00000149044.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214206Re-query CCDS DB by Protein ID:ENSMUSP00000149044
Original member Current member EBI ENSMUST00000217283.1 ENSMUSP00000150364.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217283.1Link to Ensembl Protein Viewer:ENSMUSP00000150364.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217283Re-query CCDS DB by Protein ID:ENSMUSP00000150364
Original member Current member EBI ENSMUST00000214878.1 ENSMUSP00000150931.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214878.1Link to Ensembl Protein Viewer:ENSMUSP00000150931.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214878Re-query CCDS DB by Protein ID:ENSMUSP00000150931
Original member Current member NCBI NM_146550.1 NP_666761.1 Accepted alive Link to Nucleotide Sequence:NM_146550.1Link to Protein Sequence:NP_666761.1Re-query CCDS DB by Nucleotide ID:NM_146550Re-query CCDS DB by Protein ID:NP_666761Link to BLAST:NP_666761.1

Chromosomal Locations for CCDS 24337.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 129790649 129791587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGAAGAACCATACAAGAGTGACAGTTTTCATCATAGCAGGTTTGACTGATGACCCACAGTGGAAAGTTG
TGTTATTCATCTTCCTGCTTCTTACCTATCTGCTCAGCATCACTGGCAATCTGGCCATCATTACACTCAC
CCTGGTGGATACTCACCTGAAGACACCCATGTATTTTTTCCTTCGGAATTTTTCCTTCTTAGAGTTTTCC
TACACTACTACATGCATCCCCAAATTGCTTGTTACTATGGCAACAGGTGACAAAACCATTTCCTATGGTA
ATTGTTTGACTCAAGTGTTTTTTGCTTTCTTATTTGGAGCATCAGAATTTTATTTGCTGGCAGCCATGTC
CTATGACAGATATGTAGCCATCTGCAAGCCCCTGCACTATATGACCATCATGAACAATAAAGTCTGTGTG
CAGCTGGTTCTCAGTTGTTGGCTTGCTGGCTTTTTTGTCATCTTTCCACCACTGCTGTTAGGCTTGAATC
TTGACTTCTGTGCTTCCAACATTGTTGATCATTTCTACTGTGACACAACTCCACTCTTGCAGCTTTCCTG
CACAGACACACAGCTCCTGGAAACAATGGGATTTGTCTCAGCTTTGGTAACACTCTTACTCACACTGGTA
ATGGTGATCGTATCCTACATTTACATTGCTATAACAATTCTAAAAATCCCTTCAGCCAGCCAGAGGAAGA
AGGCTTTCTCTACATGTTCTTCTCACATGATTGTAATATCCCTTTCATATGGCAGCTGCATCTTCATGTA
TGTTAAACCATCAGTCAAACAGAGAGTATCTATTTCCAAGGGAATTTCTGTGCTCAACACCTCAGTGGCT
CCACTTCTGAATCCTTTTATCTACACCTTGAGGAATCAGCAAGTGAAAAAGGCATTCATTAATACAGTAC
ACAGGATTGTGTCTTTCTCAAAGAAATGA

Translation (312 aa):
MKNHTRVTVFIIAGLTDDPQWKVVLFIFLLLTYLLSITGNLAIITLTLVDTHLKTPMYFFLRNFSFLEFS
YTTTCIPKLLVTMATGDKTISYGNCLTQVFFAFLFGASEFYLLAAMSYDRYVAICKPLHYMTIMNNKVCV
QLVLSCWLAGFFVIFPPLLLGLNLDFCASNIVDHFYCDTTPLLQLSCTDTQLLETMGFVSALVTLLLTLV
MVIVSYIYIAITILKIPSASQRKKAFSTCSSHMIVISLSYGSCIFMYVKPSVKQRVSISKGISVLNTSVA
PLLNPFIYTLRNQQVKKAFINTVHRIVSFSKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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