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Report for CCDS24342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24342.1 Public Mus musculus 10 Or6c217 23 108 98 CCDS HistoryNCBI Gene:258665Re-query CCDS DB by CCDS ID:24342.1Re-query CCDS DB by GeneID:258665See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24342.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071557.1 ENSMUSP00000071488.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071557.1Link to Ensembl Protein Viewer:ENSMUSP00000071488.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000071557Re-query CCDS DB by Protein ID:ENSMUSP00000071488
Original member Current member NCBI NM_146670.1 NP_666881.1 Accepted alive Link to Nucleotide Sequence:NM_146670.1Link to Protein Sequence:NP_666881.1Re-query CCDS DB by Nucleotide ID:NM_146670Re-query CCDS DB by Protein ID:NP_666881Link to BLAST:NP_666881.1

Chromosomal Locations for CCDS 24342.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 129901776 129902726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGATATCACAAAGAGAAATGAAGAACCATACAAGACAGATAGAGTTTATCCTTCTTGGACTGACAGATA
ATCCTCAGTTACAGACTCTGATTTTTGTGTCCCTTTTACTAAATTACTTGCTGAGTATGCTCGGGAATTT
AGCTATCATTGCCCTCACTCTGCTAGATCCCATTCTCAAGACACCAATGTATTTTTTCCTCCGTAATTTC
TCTTTCTTGGAAATTTTATTTACAACAACCTGCATTCCCAGATTTTTAATCTCTATTGTAACACAGGAGA
AGACAATTTCCTATAATGGCTGTGTTTGTCAATTATTCTTTTATATATTTTTGGGGGCCACAGAGTTTTT
CTTCTTGGCTACCATGTCCTATGACCGCTATATTGCCATCTGCAAACCCTTGCACTATGCATCTATCATG
AACAGTAAAGTTTGTCATCAGCTTGTCCTGGGTTCTTGGGTAACTGGATTCCTGGTTATTTTCCCACCAC
TGATTATTGGCCTTGATTTGGATTTCTGTGCTTCAAATGTCATTGACCATTTCCTTTGTGATGTTTCTCC
TCTCCTACAGCTCTCTTGCTCAAACACAAATTTACTAGACCTGATGGCTTTCATCTTAGCTCTCATGACA
CTCATTGTCACATTAGTAATAGTGATCTTTTCTTATGCTCACATTGCCAAGACAATTATGAAATTCCCTT
CTGTTCAGCAAAAGAAAAAGGCCTTTTCCACTTGTTCTTCTCACATGATTGTTGTTTCCCTTACTTATGG
GAGTTGCATATTTATCTACATAAAGCCTTCAGCAAATGAAAGAGTGACTTTGAGCAAAGGAATAGCTGTG
CTCAACACTTCAGTTGCCCCTTTGTTGAACCCATTTATTTATACACTGAGGAATAAGCAAGTTAAACAAG
CCTGTGGTGTAGTACTTAGAAAAATATTTTCTGCTTCATAA

Translation (316 aa):
MISQREMKNHTRQIEFILLGLTDNPQLQTLIFVSLLLNYLLSMLGNLAIIALTLLDPILKTPMYFFLRNF
SFLEILFTTTCIPRFLISIVTQEKTISYNGCVCQLFFYIFLGATEFFFLATMSYDRYIAICKPLHYASIM
NSKVCHQLVLGSWVTGFLVIFPPLIIGLDLDFCASNVIDHFLCDVSPLLQLSCSNTNLLDLMAFILALMT
LIVTLVIVIFSYAHIAKTIMKFPSVQQKKKAFSTCSSHMIVVSLTYGSCIFIYIKPSANERVTLSKGIAV
LNTSVAPLLNPFIYTLRNKQVKQACGVVLRKIFSAS


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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