NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24351.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24351.1 Public Mus musculus 10 Or9k2b 23 108 98 CCDS HistoryNCBI Gene:258671Re-query CCDS DB by CCDS ID:24351.1Re-query CCDS DB by GeneID:258671See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24351.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078322.2 ENSMUSP00000077436.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078322.2Link to Ensembl Protein Viewer:ENSMUSP00000077436.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000078322Re-query CCDS DB by Protein ID:ENSMUSP00000077436
Original member Current member EBI ENSMUST00000203720.2 ENSMUSP00000144755.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203720.2Link to Ensembl Protein Viewer:ENSMUSP00000144755.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203720Re-query CCDS DB by Protein ID:ENSMUSP00000144755
Original member Current member EBI ENSMUST00000216661.1 ENSMUSP00000149119.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216661.1Link to Ensembl Protein Viewer:ENSMUSP00000149119.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216661Re-query CCDS DB by Protein ID:ENSMUSP00000149119
Original member Current member NCBI NM_146676.1 NP_666887.1 Accepted alive Link to Nucleotide Sequence:NM_146676.1Link to Protein Sequence:NP_666887.1Re-query CCDS DB by Nucleotide ID:NM_146676Re-query CCDS DB by Protein ID:NP_666887Link to BLAST:NP_666887.1

Chromosomal Locations for CCDS 24351.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 130179937 130180878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGGCGACAGGGAAACAAGCAATCACTCAGATATGACTGACTTTATCCTTGTAGGCTTCAGGGTCAGTC
CTGAGCTCCATATCCTCCTTTTCCTGCTCTTTCTGCTTGTGTATGCCATGATCCTTCTAGGAAACCTTGG
GATGATGGCCATCATTATGACTGATCCCAGGCTGAACACACCAATGTATTTCTTCCTAGGCAACCTCTCC
TTCATCGACCTCTTCTACTCATCTGTTATTGCACCAAAGGCTATGAGCAACTTTTGGACAGAGAGCAAGT
CCATCTCATTTGCAGGCTGTGTGGCTCAGCTTTTTCTCTTTGCACTGTTCATTGTGGCTGAAGGATTTCT
CCTGGCAGCCATGGCTTATGACCGTTTCATTGCCATCTGCAACCCACTCCTGTATTCTGTTCACATGTCC
ACACGTCTCTGCACTCAGCTGGTGGCAGGCTCTTATTTTTGTGGCTGTATCAGCTCTGTTCTCCAGACTA
GCATGACATTTACTTTATCCTTTTGTGCTTCTCGAGCCATTGACCACTTTTACTGTGATACTCGACCAGT
TCAGAGATTATCTTGTAATAATCTTTTTGTCCATAAAATAGTATCCTTTTCATTATCCAGCATCATTATC
TTACCAACTGTCATAGTCATCATTGTTTCCTACATGTATATTGTGTCCACTGTTCTAAAGATACGATCCG
TGGAGGGAAGGAAGAAAGCCTTCTCCACTTGCAGCTCTCACCTGGGTGTTGTGAGTGTGCTGTATGGTGC
TGTTTTCTTCATGTATCTCACCCCTGACAGATTTCCTGAACTGAGTAAGCTGGCTTCTTTGTGCTTTTCC
CTAGTCACACCTATGCTGAACCCTCTGATTTACTCTCTGAGAAACAAAGATGTTAGAGATGCTTTAAGCA
AACTTCTAGAGAAGAAAAAGTTCATTCTTTAA

Translation (313 aa):
MGDRETSNHSDMTDFILVGFRVSPELHILLFLLFLLVYAMILLGNLGMMAIIMTDPRLNTPMYFFLGNLS
FIDLFYSSVIAPKAMSNFWTESKSISFAGCVAQLFLFALFIVAEGFLLAAMAYDRFIAICNPLLYSVHMS
TRLCTQLVAGSYFCGCISSVLQTSMTFTLSFCASRAIDHFYCDTRPVQRLSCNNLFVHKIVSFSLSSIII
LPTVIVIIVSYMYIVSTVLKIRSVEGRKKAFSTCSSHLGVVSVLYGAVFFMYLTPDRFPELSKLASLCFS
LVTPMLNPLIYSLRNKDVRDALSKLLEKKKFIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH