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Report for CCDS24375.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24375.1 Public Mus musculus 11 Sec14l3 23 108 98 CCDS HistoryNCBI Gene:380683Re-query CCDS DB by CCDS ID:24375.1Re-query CCDS DB by GeneID:380683See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24375.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068322.6 ENSMUSP00000065084.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068322.6Link to Ensembl Protein Viewer:ENSMUSP00000065084.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000068322Re-query CCDS DB by Protein ID:ENSMUSP00000065084
Original member Current member NCBI NM_001029937.2 NP_001025108.1 Accepted alive Link to Nucleotide Sequence:NM_001029937.2Link to Protein Sequence:NP_001025108.1Re-query CCDS DB by Nucleotide ID:NM_001029937Re-query CCDS DB by Protein ID:NP_001025108Link to BLAST:NP_001025108.1

Chromosomal Locations for CCDS 24375.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4064952 4065005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4066137 4066212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4066460 4066503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4066640 4066699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4067956 4068144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4069255 4069350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4070084 4070144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4071409 4071495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4074720 4074826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4075166 4075305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4075392 4075561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4076246 4076367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGAGTGGCCGAGTTGGAGACCTGAGCCCCAAGCAGGCAGAGACCCTGGCCAAGTTCCGAGAAAATGTCC
AGGATGTGCTGCCTGCCCTGCCAAACCCTGATGATTATTTTCTTCTTCGCTGGCTCCGAGCCAGGAACTT
TGACCTACAGAAATCGGAGGCCATGCTCCGCAAGTACATGGAGTTCCGGAAGACCATGGACATCGATCAC
ATCCTTGACTGGCAGCCCCCAGAGGTGATCCAGAAGTACATGCCTGGAGGCCTGTGTGGCTATGACCGTG
ATGGCTGTCCTGTGTGGTATGACATCATTGGGCCACTAGACCCCAAAGGGCTGCTTTTCTCAGTCACCAA
GCAGGACCTGTTGAAGACCAAGATGAGGGACTGTGAACGTATCCTGCATGAGTGTGACCTGCAGACAGAG
CGGCTGGGGAGGAAGATTGAAACCATTGTGATGATATTTGACTGTGAAGGTCTGGGACTGAAGCACTTCT
GGAAGCCTCTGGTGGAAGTATACCAGGAGTTCTTTGGCCTCCTTGAAGAGAATTACCCAGAGACCCTGAA
ATTCATGCTCATTGTAAAAGCCACGAAACTGTTCCCGGTGGGCTACAATCTCATGAAGCCATTCCTGAGT
GAGGACACACGAAGGAAGATCGTGGTGTTGGGAAGTAACAGCTGGAAGGAAGGTTTGCTGAAACTCATCA
GTCCTGAGGAACTGCCTGCCCATTTTGGGGGGACTCTGACTGACCCAGATGGGAACCCCAAATGTTTAAC
CAAGATCAACTACGGTGGGGAGATCCCCAAGTCCATGTATGTGCGAGACCAGGTGAAGACCCAGTATGAG
CACTCAGTGCAGATTAGCCGTGGCTCCTCACATCAGGTGGAGTATGAGATCCTGTTTCCAGGCTGTGTCC
TCAGGTGGCAGTTCTCATCTGACGGTGCAGACATTGGCTTTGGAGTTTTCCTCAAGACCAAGATGGGGGA
GAGGCAGAAGGCTGGGGAGATGGTGGAGGTGCTAACCAGCCAGCGCTACAATGCCCACATGGTGCCCGAG
GATGGGAGCCTCACCTGCTCAGAGGCTGGTGTCTATGTCCTGCGCTTTGACAACACCTATAGCTTCGTCC
ACGCCAAGAAGGTCAGCTTCACGGTTGAAGTGCTTCTCCCAGACGAGGGCATGCAGAAGTACGATGAGGA
GCTCACCCCTGTCTAG

Translation (401 aa):
MSGRVGDLSPKQAETLAKFRENVQDVLPALPNPDDYFLLRWLRARNFDLQKSEAMLRKYMEFRKTMDIDH
ILDWQPPEVIQKYMPGGLCGYDRDGCPVWYDIIGPLDPKGLLFSVTKQDLLKTKMRDCERILHECDLQTE
RLGRKIETIVMIFDCEGLGLKHFWKPLVEVYQEFFGLLEENYPETLKFMLIVKATKLFPVGYNLMKPFLS
EDTRRKIVVLGSNSWKEGLLKLISPEELPAHFGGTLTDPDGNPKCLTKINYGGEIPKSMYVRDQVKTQYE
HSVQISRGSSHQVEYEILFPGCVLRWQFSSDGADIGFGVFLKTKMGERQKAGEMVEVLTSQRYNAHMVPE
DGSLTCSEAGVYVLRFDNTYSFVHAKKVSFTVEVLLPDEGMQKYDEELTPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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