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Report for CCDS24408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24408.1 Public Mus musculus 11 Myl7 23 108 98 CCDS HistoryNCBI Gene:17898Re-query CCDS DB by CCDS ID:24408.1Re-query CCDS DB by GeneID:17898See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24408.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102921.3 ENSMUSP00000099985.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102921.3Link to Ensembl Protein Viewer:ENSMUSP00000099985.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102921Re-query CCDS DB by Protein ID:ENSMUSP00000099985
Original member Current member NCBI NM_022879.2 NP_075017.2 Accepted alive Link to Nucleotide Sequence:NM_022879.2Link to Protein Sequence:NP_075017.2Re-query CCDS DB by Nucleotide ID:NM_022879Re-query CCDS DB by Protein ID:NP_075017Link to BLAST:NP_075017.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075017.2 175 Q9QVP4 175 100% 0 0

Chromosomal Locations for CCDS 24408.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5896680 5896781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5897126 5897174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5897320 5897398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5897832 5897936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5898160 5898235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5898426 5898539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5898761 5898763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGGCCAGTAGGAAGGCTGGGACCCGAGGCAAGGCTGCAGCCACCAAGCAGGCACAACGTGGCTCTTCTA
ATGTCTTCTCAATGTTCGAACAAGCCCAGATTCAGGAATTCAAGGAAGCCTTCAGCTGCATTGACCAGAA
CAGGGATGGGATCATCTGCAAATCAGACCTGAAGGAGACCTATTCCCAGCTCGGGAGGGTAAGTGTTCCG
GAGGAAGAGCTGGACGCCATGCTGCAGGAAGGGAAGGGTCCCATCAACTTCACCGTCTTCCTCACACTCT
TCGGGGAGAAGCTCAATGGGACGGACCCCGAGGAAGCCATCCTGAGTGCCTTCCGCATGTTCGACCCCAG
CGGCCAGGGGGTGGTGAACAAGGAAGAGTTCAAGCAGCTTCTCATGACCCAGGCAGACAAGTTCTCTCCT
GCTGAGGTAGAGCAACTGTTTGCGCTGACACCCATGGACCTGGCCGGCAACATTGACTACAAGTCTCTCT
GCTACATCATCACCCACGGGGATGAGAAAGAGGAGTAG

Translation (175 aa):
MASRKAGTRGKAAATKQAQRGSSNVFSMFEQAQIQEFKEAFSCIDQNRDGIICKSDLKETYSQLGRVSVP
EEELDAMLQEGKGPINFTVFLTLFGEKLNGTDPEEAILSAFRMFDPSGQGVVNKEEFKQLLMTQADKFSP
AEVEQLFALTPMDLAGNIDYKSLCYIITHGDEKEE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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