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Report for CCDS24418.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24418.1 Public Mus musculus 11 Zmiz2 23 108 98 CCDS HistoryNCBI Gene:52915Re-query CCDS DB by CCDS ID:24418.1Re-query CCDS DB by GeneID:52915See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24418.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000012612.10 ENSMUSP00000012612.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000012612.10Link to Ensembl Protein Viewer:ENSMUSP00000012612.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000012612Re-query CCDS DB by Protein ID:ENSMUSP00000012612
Original member Current member EBI ENSMUST00000109786.7 ENSMUSP00000105409.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109786.7Link to Ensembl Protein Viewer:ENSMUSP00000105409.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109786Re-query CCDS DB by Protein ID:ENSMUSP00000105409
Original member Current member EBI ENSMUST00000109787.7 ENSMUSP00000105410.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109787.7Link to Ensembl Protein Viewer:ENSMUSP00000105410.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109787Re-query CCDS DB by Protein ID:ENSMUSP00000105410
Original member NCBI NM_028601.3 NP_082877.2 Updated not alive Link to Nucleotide Sequence:NM_028601.3Link to Protein Sequence:NP_082877.2Re-query CCDS DB by Nucleotide ID:NM_028601Re-query CCDS DB by Protein ID:NP_082877
Current member NCBI NM_028601.4 NP_082877.2 Accepted alive Link to Nucleotide Sequence:NM_028601.4Link to Protein Sequence:NP_082877.2Re-query CCDS DB by Nucleotide ID:NM_028601Re-query CCDS DB by Protein ID:NP_082877Link to BLAST:NP_082877.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082877.2 920 Q8CIE2-1 920 100% 0 0

Chromosomal Locations for CCDS 24418.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 6395629 6395678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6395758 6395872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6396232 6396434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6396665 6396848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6397029 6397289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6397507 6397686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6398262 6398339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6398556 6398724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6399504 6399648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6399723 6399933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6400770 6400875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6401098 6401255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6402407 6402474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6402804 6402872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6403120 6403364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6403786 6403955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6404040 6404282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6404990 6405097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2763 nt):
ATGAACCCCATGAACCCCATGAAACCCGCCCTGCCCCCTGCACCACACGGTGATGGTTCATTTGCATATG
AGTCTGTGCCTTGGCAACAAAGTGCCACTCAGCCAGCTGGGTCACTGTCTGTGGTCACTACTGTGTGGGG
AGTTGGCAACGCAACCCAGAGCCAGGTTTTAGGGAACCCCATGGGCCCTGCAGGAAGCCCCCCTGGTGGT
TCCATGATGCCTGGTGTGGCAGGTGGCAGCTCTGCCTTGACCTCCCCGCAGTGCCTGGGACAGCAGGCGT
TTGCTGAAGGAGGTGCTAGCAAGAGCTACGTACAGCAAGGCGTGTATGGCCGAGGGAGCTACCCTGGGGG
ATCCAGCTTCACTACTGGGTATGCAGGAGGCCCTGCAGGCCTGGGGCTCCCCACACATGCAGCACGGCCC
TCAACTGACTTCACACAAGCAGCAGCTGCAGCTGCCATGGCTGCTGCTGCAGCCACCGCGACAGCCACAG
CCACAGCCACGGTGGCTGCCCTGCAGGAGAAGCAGAGCCAGGAGCTAAGTCAGTATGGAGCGATGGGGAC
TGGGCAGTCTTTTAACAGCCAGTTTCTGCAGCATGGAGGTCCTCGAGGACCCAGTGTGCCCCCTGGCATG
AACCCTTCAGGCATGGGAGGAATGATGGGCCCCTCTGGCCTTTCTTCAATGGCCATGACTCCTACCCGGG
CAGCAGGCATGACACCCTTATATGCAGGACAGCGACTGCCTCAGCATGGGTACCCTGGGCCTCCGCAGGG
GCAGCCACTGCCTCGACAGGGGATCAAGAGAGCCTACTCAGAGGTGTATCCTGGGCAGCAGTATCTGCAA
GGAGGCCAGTATGCAGCCAACACTGCCCAGTATGCTCCTGGCCCTGGGCAGCCCCCTGGCCCTGCCTCCT
CCTATGCAGGACACAGACTACCCCTGCAGCAGGGAATGGCCCAGTCCCTGTCTGCGCCTGGCCCCACGGG
ACTGCATTACAAGCCCACAGAGCAGTTCAACGGGCAGGGCGCCAGCTTCAACGGGGGCAGCATCAGCTAC
AGCCAGCCTGGCTTGAGTGGGCCTTCCCGCTCCATCCCTGGTTACCCCAGCTCCCCACTGCCGGGGAATC
CCACACCACCCATGACGCCTAGCAGCAATGTTCCCTACATGTCCCCAAGCCAGGAAGTCAAGTCTCCTTT
CCTGCCTGACCTCAAGCCAGGCCTCAGCTCCTTGCACCCGTCACCCTCCGCAAGTGTCCATTGTGATGAG
CTGCGCCTGACCTTCCCAGTTCGAGATGGGGTGGTCCTGGAGCCCTTCCGCCTGCAGCACAACCTGGCTG
TGAGCAACCATGTCTTCCAGCTCCGAGATTCTGTCTATAAGACCCTGATGCTGAGGCCTGACCTGGAGCT
GCAGTTTAAGTGCTATCACCATGAGGACCGGCAGATGAACACCAACTGGCCAGCATCTGTGCAGGTCAGC
GTCAATGCCACACCCCTCAGCATTGAGCGTGGAGACAACAAGACCTCGCACAAGCCCCTCTACCTGAAGC
ATGTGTGCCAGCCAGGTCGCAACACCATCCAGATCACTGTCACCGCCTGCTGCTGTTCCCACCTCTTCGT
GCTGCAGCTGGTGCACCGTCCGTCTGTCCGTTCCGTGCTGCAGGGCCTCCTCAAGAAGCGCCTATTGCCA
GCTGAACACTGCATCACCAAGATAAAGCGGAACTTCAGTAGCGGCACCATCCCTGGCACCCCTGGGCCCA
ATGGAGAGGATGGGGTGGAGCAGACGGCTATCAAGGTGTCCCTGAAGTGCCCCATCACCTTCCGCAGGAT
CCAGCTCCCAGCCCGTGGTCACGACTGTCGACATATACAGTGCTTTGACCTGGAGTCATACTTACAGCTC
AACTGTGAGCGGGGGACCTGGAGGTGTCCGGTATGCAACAAGACGGCATTGCTGGAGGGCCTGGAGGTGG
ATCAGTATATGCTGGGCATCCTGATTTATATTCAGAACTCAGACTACGAGGAGATCACCATTGACCCCAC
GTGCAGCTGGAAGCCAGTGCCTGTGAAGCCTGACCTACACATCAAGGAGGAGCCGGATGGGCCAGTGCTG
AAGCGCTGCCGCACTGTGAGCCCTGCCCATGTGCTCATGCCCAGTGTGATGGAGATGATTGCAGCCCTGG
GCCCTGGCGCTGCCCCTTTTGCCCCATTGCAGCCCCCTTCGGCCCCAACCCCCAGCGACTATCCCAGCCA
GGGTTCCAACTTCATGGGGCCTGGAACTTTCCCAGAATCCTTCCCATCTGCTACACCCACCACCCCAAAC
CTTGCTGAGTTCACCCAGGGGCCACCCCCAATCTCCTACCAGTCTGACATTCCCAGCAGCCTCCTGACTC
CAGACAAGTCTACTCCTTGCCTCCCAGGCCAGATGGCACCAGCAGGCCACCTGGACCCAGCCCATAATCC
TGGACCACCAGGACTGCACACTCCCAACCTCGGGCCCACCCCAGGCACTCAGCTACACCATCCAAACCCT
TCCCCTGCATCCCGGCAGCCCCTGGGCCAACCAAACACAGGACCCATCAGCGAACTGGCTTTCAATCCTG
CCTCAGGCATGATGGGGCCTCCCAGCATGACTGGGGCAGGGGAGGCCTCAGAACCAGCTTTGGACCTGCT
CCCAGAACTGACCAATCCTGATGAACTGCTCTCCTACCTGGGCCCACCTGACCTCCCCACAAACAGCAGT
GATGATCTGCTCTCACTCTTCGAGAACAACTGA

Translation (920 aa):
MNPMNPMKPALPPAPHGDGSFAYESVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPPGG
SMMPGVAGGSSALTSPQCLGQQAFAEGGASKSYVQQGVYGRGSYPGGSSFTTGYAGGPAGLGLPTHAARP
STDFTQAAAAAAMAAAAATATATATATVAALQEKQSQELSQYGAMGTGQSFNSQFLQHGGPRGPSVPPGM
NPSGMGGMMGPSGLSSMAMTPTRAAGMTPLYAGQRLPQHGYPGPPQGQPLPRQGIKRAYSEVYPGQQYLQ
GGQYAANTAQYAPGPGQPPGPASSYAGHRLPLQQGMAQSLSAPGPTGLHYKPTEQFNGQGASFNGGSISY
SQPGLSGPSRSIPGYPSSPLPGNPTPPMTPSSNVPYMSPSQEVKSPFLPDLKPGLSSLHPSPSASVHCDE
LRLTFPVRDGVVLEPFRLQHNLAVSNHVFQLRDSVYKTLMLRPDLELQFKCYHHEDRQMNTNWPASVQVS
VNATPLSIERGDNKTSHKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLP
AEHCITKIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDLESYLQL
NCERGTWRCPVCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTCSWKPVPVKPDLHIKEEPDGPVL
KRCRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSAPTPSDYPSQGSNFMGPGTFPESFPSATPTTPN
LAEFTQGPPPISYQSDIPSSLLTPDKSTPCLPGQMAPAGHLDPAHNPGPPGLHTPNLGPTPGTQLHHPNP
SPASRQPLGQPNTGPISELAFNPASGMMGPPSMTGAGEASEPALDLLPELTNPDELLSYLGPPDLPTNSS
DDLLSLFENN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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