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Report for CCDS24533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24533.1 Public Mus musculus 11 Tlx3 23 108 98 CCDS HistoryNCBI Gene:27140Re-query CCDS DB by CCDS ID:24533.1Re-query CCDS DB by GeneID:27140See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24533.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037746.7 ENSMUSP00000047457.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037746.7Link to Ensembl Protein Viewer:ENSMUSP00000047457.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000037746Re-query CCDS DB by Protein ID:ENSMUSP00000047457
Original member Current member NCBI NM_019916.2 NP_064300.2 Accepted alive Link to Nucleotide Sequence:NM_019916.2Link to Protein Sequence:NP_064300.2Re-query CCDS DB by Nucleotide ID:NM_019916Re-query CCDS DB by Protein ID:NP_064300Link to BLAST:NP_064300.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064300.2 291 O55144 291 100% 0 0

Chromosomal Locations for CCDS 24533.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 33201279 33201489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33202429 33202672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33203039 33203459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGAGGCGCCCGCCAGCGCGCAGACCCCACACCCGCACGAGCCCATCAGCTTCGGCATCGACCAAATCC
TCAACAGCCCGGACCAGGACAGCGCGCCCGCCCCGCGGGGCCCCGACGGCGCCAGCTACCTGGGAGGGCC
CCCCGGGGGCCGTCCGGGCGCCGCGTACCCGTCTCTGCCCGCCTCCTTTGCGGGCCTCGGCGCGCCCTTC
GAGGACGCGGGATCTTACAGTGTCAACCTAAGCTTGGCCCCCGCCGGCGTGATCCGGGTGCCAGCGCACA
GGCCGCTCCCTGGGGCCGTGCCGCCGCCTCTGCCTAGCGCGCTGCCCGCTATGCCCTCGGTGCCCACGGT
CTCCAGCCTAGGCGGCCTCAATTTCCCCTGGATGGAGAGCAGTCGCCGCTTTGTAAAGGACCGCTTCACA
GCGGCGGCCGCGCTCACGCCCTTCACCGTGACCCGGCGCATTGGCCACCCCTACCAGAACCGGACGCCAC
CCAAGCGTAAGAAGCCGCGCACGTCCTTTTCCCGGGTGCAGATCTGTGAGCTGGAAAAGCGCTTCCATCG
CCAAAAGTACCTGGCCTCGGCCGAGAGGGCGGCGCTCGCAAAGTCCCTCAAAATGACGGACGCGCAGGTC
AAGACCTGGTTCCAAAATCGGAGGACCAAGTGGCGGCGGCAGACGGCGGAGGAGCGGGAGGCGGAGCGGC
AGCAGGCGAGCCGGCTCATGCTACAGCTGCAACACGACGCCTTCCAGAAGAGCCTCAACGATTCCATCCA
GCCCGACCCGCTCTGTCTGCACAACTCGTCGCTCTTTGCTCTGCAGAATCTGCAGCCCTGGGAGGAGGAC
AGTTCCAAGGTCCCCGCTGTCACCTCTCTGGTGTGA

Translation (291 aa):
MEAPASAQTPHPHEPISFGIDQILNSPDQDSAPAPRGPDGASYLGGPPGGRPGAAYPSLPASFAGLGAPF
EDAGSYSVNLSLAPAGVIRVPAHRPLPGAVPPPLPSALPAMPSVPTVSSLGGLNFPWMESSRRFVKDRFT
AAAALTPFTVTRRIGHPYQNRTPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQV
KTWFQNRRTKWRRQTAEEREAERQQASRLMLQLQHDAFQKSLNDSIQPDPLCLHNSSLFALQNLQPWEED
SSKVPAVTSLV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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