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Report for CCDS24616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24616.1 Public Mus musculus 11 Or2y11 23 108 98 CCDS HistoryNCBI Gene:258461Re-query CCDS DB by CCDS ID:24616.1Re-query CCDS DB by GeneID:258461See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24616.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167248.2 ENSMUSP00000126003.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167248.2Link to Ensembl Protein Viewer:ENSMUSP00000126003.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000167248Re-query CCDS DB by Protein ID:ENSMUSP00000126003
Original member Current member EBI ENSMUST00000213256.1 ENSMUSP00000149881.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213256.1Link to Ensembl Protein Viewer:ENSMUSP00000149881.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213256Re-query CCDS DB by Protein ID:ENSMUSP00000149881
Original member Current member NCBI NM_146469.2 NP_666680.2 Accepted alive Link to Nucleotide Sequence:NM_146469.2Link to Protein Sequence:NP_666680.2Re-query CCDS DB by Nucleotide ID:NM_146469Re-query CCDS DB by Protein ID:NP_666680Link to BLAST:NP_666680.2

Chromosomal Locations for CCDS 24616.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49551749 49552684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGAATATTTGAACACCAGTTCAGAAGAGGGCTTCATTTTAGTGGGCTTCTCAGACTGGCCTCACCTAG
AACCAACCCTTTTTGCTTTCATTTCTATTTTCTACTCTCTGACTCTCTTTGGCAACACCGTGATCATCAT
TCTGTCTCGACTGGACCTCCGCCTGCACACACCCATGTACTACTTCCTCTGCCACCTCTCCTTCCTGGAC
CTCTGCTACACCACCAGCACTGTGCCCCAGCTTCTGGTCAACCTCTCTGGACTTGACAGGACCATCAGCT
TTGGAAGGTGTGTGGCCCAGCTCTGCATAGTGCTCTCACTGGGAGGAACTGAGTGTGTGCTTTTGGTGAC
AATGGCTATAGATCGCTATGCTGCTGTGTGTCGCCCACTCCACTACACAACCATTATGCACCCTGTTCTC
TGCAGAGCATTGGTTGTATTCTCCTGGGTGGGGGGCCTTGTGAACTCTCTGATCCAGACAAGCCTTGTGA
TGGCCATGCCTCTGTGTGGACACCAACTGAATCACTTCTTCTGTGAGCTACCTGTTCTCCTGAAGATGGC
CTGTGAGGACACAGGAGGAACAGAGGTCAATTTGTTTGTGGCCCGGGTCATAATCTTAGTGTGTCCTTTA
CTGCTAATTCTAGGCTCCTATGCTCACATTGCCAGGGCAGTGCTGAACATCAGGTCAATGGCTGGTCGCA
GAAAGGCTTTTGGGACGTGTGCATCTCATCTCATTGTGGTTGCCATGTTTTATGGCTCAGCCATCTCCAC
ATACCTCCAACCTGTCCACAGGTATTCTGAGAAGGAGGGAAAATTTCTTGCCCTTTTTTATACTATCATC
ACCCCCATGCTCAACCCTCTGATCTATACGCTGAGGAACAAGGATGTGAAAGGAGCCCTGTGGAAGGTGC
TAGGGAGAGGCACAGACTCCAGGTAG

Translation (311 aa):
MEYLNTSSEEGFILVGFSDWPHLEPTLFAFISIFYSLTLFGNTVIIILSRLDLRLHTPMYYFLCHLSFLD
LCYTTSTVPQLLVNLSGLDRTISFGRCVAQLCIVLSLGGTECVLLVTMAIDRYAAVCRPLHYTTIMHPVL
CRALVVFSWVGGLVNSLIQTSLVMAMPLCGHQLNHFFCELPVLLKMACEDTGGTEVNLFVARVIILVCPL
LLILGSYAHIARAVLNIRSMAGRRKAFGTCASHLIVVAMFYGSAISTYLQPVHRYSEKEGKFLALFYTII
TPMLNPLIYTLRNKDVKGALWKVLGRGTDSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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