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Report for CCDS24739.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24739.1 Public Mus musculus 11 Or2ak7 23 108 98 CCDS HistoryNCBI Gene:216783Re-query CCDS DB by CCDS ID:24739.1Re-query CCDS DB by GeneID:216783See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 24739.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000204718.2 ENSMUSP00000145531.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204718.2Link to Ensembl Protein Viewer:ENSMUSP00000145531.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204718Re-query CCDS DB by Protein ID:ENSMUSP00000145531
Original member Current member EBI ENSMUST00000214662.1 ENSMUSP00000150051.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214662.1Link to Ensembl Protein Viewer:ENSMUSP00000150051.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214662Re-query CCDS DB by Protein ID:ENSMUSP00000150051
Original member Current member NCBI NM_207230.1 NP_997113.1 Accepted alive Link to Nucleotide Sequence:NM_207230.1Link to Protein Sequence:NP_997113.1Re-query CCDS DB by Nucleotide ID:NM_207230Re-query CCDS DB by Protein ID:NP_997113Link to BLAST:NP_997113.1

Chromosomal Locations for CCDS 24739.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58683875 58684795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGAGACAGGAAACCGCAGCTGTGGGACAGACTTCAGCTTGGTTGGCCTTTTCCAGGATGGACACATGG
ACACTTTCCTCTTCACACTGATTGCCATCCTCTTTGCAGTGGCTTTCATAGGCAACATCACACTGGTCCT
CCTCATCAGGCTGGACTGCAGACTCCACACCCCCATGTACTTTCTCCTCAGCCAGCTCTCCATCATTGAC
ATGATGTACATCTCTACCACTGTGCCCAAGGTGGCAGCTAACTTCCTCTCAGACACCAAGGCCATTTCCT
TTCTGGGCTGTGCTGTCCAAGCCTTTGTGTTTCTGACCCTGGGTGGATCTGAAGCCCTCCTGCTGGGCTT
CATGTCCTATGACAGGTATATAGCCATCTGCCGACCCTTGCACTACCCTGTGCTCATGAGTAGGAAGATC
TGCTGCTCCATGGTCGCTGGTGCCTGGAGCAGCAGCTCCATCAATGCATTCATGCACACAGTGTATGTGT
TTCAACTTCCATTCTGTGGCTCTAGGATGGTTAACCACTTTTTCTGTGAGGTTCCATCTCTCCTTCCACT
GGTGTGTGAAGACACGTCCCAGTATGAGCATACAGTCCTCGTGAGTGGACTTGTCATTCTGCTGCTCCCC
TTCCTGGCCATCCTAGCTTCCTATGCTCGGGTCTTGGTTGTTGTACTCCAGATGGGTTCAGGAAAGGGAC
AGAGTAGAGCTGTGTCCACCTGCTCCTCACACCTGACTGTGGCCAGCCTGTTCTATGTTACTGGACTCTC
CACATATACCCAGCCACACTCCTTGCATTCTCCTGGAAGGGACAAAGTAGTGGCTGTGCTCTACTCAATC
GTCACCCTTGTTCTGAACCCATTCATCTACAGCCTGAGGAACAAGGAGGTCATGGGGGCACTGAGGAGAC
AAATGGGGTGA

Translation (306 aa):
METGNRSCGTDFSLVGLFQDGHMDTFLFTLIAILFAVAFIGNITLVLLIRLDCRLHTPMYFLLSQLSIID
MMYISTTVPKVAANFLSDTKAISFLGCAVQAFVFLTLGGSEALLLGFMSYDRYIAICRPLHYPVLMSRKI
CCSMVAGAWSSSSINAFMHTVYVFQLPFCGSRMVNHFFCEVPSLLPLVCEDTSQYEHTVLVSGLVILLLP
FLAILASYARVLVVVLQMGSGKGQSRAVSTCSSHLTVASLFYVTGLSTYTQPHSLHSPGRDKVVAVLYSI
VTLVLNPFIYSLRNKEVMGALRRQMG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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