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Report for CCDS24789.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24789.2 Reviewed, update pending Mus musculus 11 Atpaf2 23 108 98 CCDS HistoryNCBI Gene:246782Re-query CCDS DB by CCDS ID:24789.2Re-query CCDS DB by GeneID:246782See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 24789.2
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data. The updated start codon is only conserved in mouse and rat, and it has a weak Kozak signal. It is possible that ribosomal leaky scanning may allow the better conserved downstream start codon to be used some of the time. There is no experimental evidence indicating which start codon is preferentially used in vivo.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 24789.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000239016.1 ENSMUSP00000159091.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000239016.1Link to Ensembl Protein Viewer:ENSMUSP00000159091.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000239016Re-query CCDS DB by Protein ID:ENSMUSP00000159091
Original member NCBI NM_145427.3 NP_663402.2 Updated not alive Link to Nucleotide Sequence:NM_145427.3Link to Protein Sequence:NP_663402.2Re-query CCDS DB by Nucleotide ID:NM_145427Re-query CCDS DB by Protein ID:NP_663402
Current member NCBI NM_145427.4 NP_663402.3 Pending alive Link to Nucleotide Sequence:NM_145427.4Link to Protein Sequence:NP_663402.3Re-query CCDS DB by Nucleotide ID:NM_145427Re-query CCDS DB by Protein ID:NP_663402Link to BLAST:NP_663402.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663402.3 289 Q91YY4 289 100% 0 0

Chromosomal Locations for CCDS 24789.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60401401 60401538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60403837 60403952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60404380 60404492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60405776 60405856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60407294 60407391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60409260 60409405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60409586 60409630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60416751 60416910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGTGTCCACCCAGGTCCTTGGGCAGGATGTGGCGAATCTACCCCCGGCTGAGGGACCGGTGGCGCGGTC
TCTTGGACCGGCGTCTCAGTGACCCCACCGTCTCAGTATGGCCGGGGCCAGCTCCGCAGCCTCCGGCCCG
GGCCTATGTCCCGCCAACAGAAAGGAAGAGGTTTTATCAGAATGTCAGCATCTCACAGGGTGAAGGTGGC
TTTGAGATAAACCTGGACCACAGAAAGCTGAAAACTCCCCAAGCCAAGCTTTTTACTGTCCCCAGCGAAG
CCCTGGCCATCGCAGTGGCCACTGAATGGGACTCTCAGCAGGATACCATCAAGTTCTACACCATGCACCT
GACCACATTGTGCAACACATCCTTGGACAACCCAACCCAGCGAAGTAAAGACCAGCTGATCCGGGCAGCT
GTGAAGTTTCTAGACACTGACACCATCTGCTACAGGGTGGAAGAGCCAGAGACATTAGTGGAACTTCAGA
AGAACGAATGGGATCCCGTCATAGAGTGGGCTGAGAAAAGGTACGGTATGGAGATCGGCTCCTCCACCAG
CATAATGGGACCCAGCATCCCTACCCAGACCCGAGAGGTGCTTACCAGCCACTTGTCCTCTTACAACATG
TGGGCTCTGCAAGGGATTGAGTTTGTAGTGGCCCAGCTCAAATCCATGTTGCTGACTTTGGGCCTGATTG
ACTTGCGCCTGACTGTGGAACAAGCTGTGCTTCTGTCACGCCTGGAGGAAGAGTACCAGATCCAGAAGTG
GGGCAACATTGAGTGGGCCCACGACTATGAGCTCCAGGAGCTGCGGGCTCGCACTGCTGCTGGCACCCTT
TTTGTCCACCTCTGCTCAGAAAGCTCTACAGTCAAGCACAAGCTCCTTCAAGAGTGA

Translation (298 aa):
MCPPRSLGRMWRIYPRLRDRWRGLLDRRLSDPTVSVWPGPAPQPPARAYVPPTERKRFYQNVSISQGEGG
FEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKFYTMHLTTLCNTSLDNPTQRSKDQLIRAA
VKFLDTDTICYRVEEPETLVELQKNEWDPVIEWAEKRYGMEIGSSTSIMGPSIPTQTREVLTSHLSSYNM
WALQGIEFVVAQLKSMLLTLGLIDLRLTVEQAVLLSRLEEEYQIQKWGNIEWAHDYELQELRARTAAGTL
FVHLCSESSTVKHKLLQE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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