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Report for CCDS24848.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24848.1 Public Mus musculus 11 Shisa6 23 108 98 CCDS HistoryNCBI Gene:380702Re-query CCDS DB by CCDS ID:24848.1Re-query CCDS DB by GeneID:380702See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24848.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066679.6 ENSMUSP00000071025.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066679.6Link to Ensembl Protein Viewer:ENSMUSP00000071025.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000066679Re-query CCDS DB by Protein ID:ENSMUSP00000071025
Original member NCBI NM_001034874.3 NP_001030046.1 Updated not alive Link to Nucleotide Sequence:NM_001034874.3Link to Protein Sequence:NP_001030046.1Re-query CCDS DB by Nucleotide ID:NM_001034874Re-query CCDS DB by Protein ID:NP_001030046
Current member NCBI NM_001034874.4 NP_001030046.1 Accepted alive Link to Nucleotide Sequence:NM_001034874.4Link to Protein Sequence:NP_001030046.1Re-query CCDS DB by Nucleotide ID:NM_001034874Re-query CCDS DB by Protein ID:NP_001030046Link to BLAST:NP_001030046.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001030046.1 525 Q3UH99-1 525 100% 0 0

Chromosomal Locations for CCDS 24848.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 66217472 66218022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66219887 66220039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66224936 66224992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66502652 66502812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66525309 66525964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGGCGCTGCGCCGCCTCCTGCTGCCGCCTCTGCTGCTGTCGCTGCTGCTGTCGCTCGCGTCCCTGCACC
TGCCGCCCGGCGCAGACGCCGCCCGCGGCCGCTCCGGGAACCGGACCCTGAACGCGGGAGCCGTCGGAGG
TCGGCGTGCTGGGGGCGCCCTGGCCCGAGGCGGCCGCGAACTAAACAGCACCGCCCGAGCGTCCGGCGTC
CCGGAGGCGGGCAGCCGGCGGGGACAGTCCGCAGCAGCGGCAGCGGCGGCGGCGGCGGCGGCCAGCGCGA
CTGTTACTTACGAGACGTGCTGGGGCTACTACGACGTGAGCGGCCAGTACGACAAGGAGTTCGAGTGCAA
CAACAGCGAGAGCGGCTACCTGTACTGCTGCGGCACCTGCTACTATCGCTTCTGCTGCAAGAAGCGCCAC
GAGAAGCTGGACCAGCGCCAGTGCACCAACTACCAAAGCCCCGTATGGGTGCAGACGCCCAGCACCAAGG
TAGTGTCGCCGGGGCCCGAGAACAAGTACGACCCGGAGAAGGACAAGACCAACTTCACCGTCTACATCAC
TTGCGGGGTGATCGCCTTCGTCATCGTGGCGGGCGTCTTCGCCAAGGTCTCCTATGACAAGGCCCACCGC
CCTCCGCGAGAGATGAACATCCACAGGGCTCTGGCTGACATTCTAAGACAACAGGGACCAATCCCCATAG
CACACTGTGAAAGAGAAACCATCTCGGCCATCGATACCTCTCCCAAAGAGAACACGCCGGTCCGATCAAC
CTCCAAAAACCACTACACCCCTGTGCGCACAGCCAAGCAGACTCCAGGTGATCGTCAGTATAATCATCCG
ATCTTAAGCAGCGCTACCCAGACCCCTACACATGAGAAGCCACGGATGAATAACATTCTGACGTCGGCCA
CGGAACCCTATGACCTCTCCTTCTCACGCTCTTACCAGAACTTAGCCCACTTGCCTCCATCATATGAATC
TGCAGTGAAAACCAATCCAAGCAAGTACTCGTCTCTGAAGAGGCTAACGGACAAGGAAGCTGATGAGTAT
TACATGAGAAGGAGGCACCTGCCAGACCTTGCAGCCCGTGGTACCCTCCCCCTCAATGTCATCCAGATGT
CTCAACAGAAGCCACTTCCTCGAGAACGGCCACGCAGGCCCATCAGGGCCATGTCCCAGGACAGGGTCTT
GTCTCCACGTCGGGGATTGCCAGATGAATTCGGCATGCCCTATGACCGCATCTTGTCTGATGAACAGCTG
CTCTCCACAGAGCGCCTGCACTCCCAGGACCCGTTGCTGTCCCCAGAGAGGACAGCCTTCCCGGAGCAGT
CGCTGTCGCGGGCCATCTCGCATACGGACGTCTTTGTGTCCACGCCAGTGCTGGACCGCTACCGCATGAC
CAAGATGCACTCCCATCCCAGTGCCTCCAATAACTCCTATGCCACCCTGGGCCAGAGCCAGACAGCAGCC
AAGCGCCACGCCTTTGCCTCTCGCAGACACAACACGGTGGAGCAGTTACACTATATCCCAGGCCATCACA
CCTGCTACACAGCCAGCAAGACTGAAGTGACCGTGTGA

Translation (525 aa):
MALRRLLLPPLLLSLLLSLASLHLPPGADAARGRSGNRTLNAGAVGGRRAGGALARGGRELNSTARASGV
PEAGSRRGQSAAAAAAAAAAASATVTYETCWGYYDVSGQYDKEFECNNSESGYLYCCGTCYYRFCCKKRH
EKLDQRQCTNYQSPVWVQTPSTKVVSPGPENKYDPEKDKTNFTVYITCGVIAFVIVAGVFAKVSYDKAHR
PPREMNIHRALADILRQQGPIPIAHCERETISAIDTSPKENTPVRSTSKNHYTPVRTAKQTPGDRQYNHP
ILSSATQTPTHEKPRMNNILTSATEPYDLSFSRSYQNLAHLPPSYESAVKTNPSKYSSLKRLTDKEADEY
YMRRRHLPDLAARGTLPLNVIQMSQQKPLPRERPRRPIRAMSQDRVLSPRRGLPDEFGMPYDRILSDEQL
LSTERLHSQDPLLSPERTAFPEQSLSRAISHTDVFVSTPVLDRYRMTKMHSHPSASNNSYATLGQSQTAA
KRHAFASRRHNTVEQLHYIPGHHTCYTASKTEVTV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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