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Report for CCDS24850.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24850.1 Public Mus musculus 11 Tmem220 23 108 98 CCDS HistoryNCBI Gene:338369Re-query CCDS DB by CCDS ID:24850.1Re-query CCDS DB by GeneID:338369See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24850.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079077.11 ENSMUSP00000078084.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079077.11Link to Ensembl Protein Viewer:ENSMUSP00000078084.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079077Re-query CCDS DB by Protein ID:ENSMUSP00000078084
Original member Current member NCBI NM_177392.3 NP_796366.1 Accepted alive Link to Nucleotide Sequence:NM_177392.3Link to Protein Sequence:NP_796366.1Re-query CCDS DB by Nucleotide ID:NM_177392Re-query CCDS DB by Protein ID:NP_796366Link to BLAST:NP_796366.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796366.1 191 Q8BP07-2 191 100% 0 0

Chromosomal Locations for CCDS 24850.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 67025179 67025271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67025909 67025938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67026123 67026194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67029966 67030026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67031062 67031185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67032181 67032240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67034109 67034244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGCGCCAGCAGTGGCTACTTGGGCTCCCGGCTTGTGGCGGGCCTGCAACGCACTCATGGCAGCTTTCT
TCGCCCTGGCCGCTGTGGTGCAGGTAAACGATCCAGATGCAGAGTTGTGGGTGACACGAAAGTCTTTCTG
CAGAGAGAGCTTATACCAGCGACTCCCACTTCCCATGACTACACCGGGCATGACAGTGGTGTACATGATC
CCAGCAGTGCTTACCCTGCTTGTTGGGTTTAATCCTCTTGTCACAGGCAACTTCATCTGGAAGAGTGTGT
CTGCGATACACATGCTGTTCTGTGCGCTGTGGGCTGGCGGCTTGGCGTACCACTTCTTGCTTCACGCAAA
GCAGAACCTCCTAAATGAGGAAGAAGGCAGGGAGCTGTCTGGCCTGGTGATTGTCACAGCATGGATGGCC
CTGTGCCACAGCTCATCCAAGAATCCAGGTGGTGGAAGAATGCACTTGGCTATTGCTGTTGTAATCACCC
TACTCCCACTCCTGTCGTGGGTCTACGTACACATGAACAAGGAGATGCGGTCCTCCTGGCCAACTCACTG
CAAGACAGTCATTTAA

Translation (191 aa):
MAPAVATWAPGLWRACNALMAAFFALAAVVQVNDPDAELWVTRKSFCRESLYQRLPLPMTTPGMTVVYMI
PAVLTLLVGFNPLVTGNFIWKSVSAIHMLFCALWAGGLAYHFLLHAKQNLLNEEEGRELSGLVIVTAWMA
LCHSSSKNPGGGRMHLAIAVVITLLPLLSWVYVHMNKEMRSSWPTHCKTVI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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