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Report for CCDS24887.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24887.1 Public Mus musculus 11 Gucy2e 23 108 98 CCDS HistoryNCBI Gene:14919Re-query CCDS DB by CCDS ID:24887.1Re-query CCDS DB by GeneID:14919See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24887.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021259.8 ENSMUSP00000021259.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021259.8Link to Ensembl Protein Viewer:ENSMUSP00000021259.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000021259Re-query CCDS DB by Protein ID:ENSMUSP00000021259
Original member Current member EBI ENSMUST00000108664.1 ENSMUSP00000104304.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108664.1Link to Ensembl Protein Viewer:ENSMUSP00000104304.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108664Re-query CCDS DB by Protein ID:ENSMUSP00000104304
Original member Current member EBI ENSMUST00000108665.7 ENSMUSP00000104305.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108665.7Link to Ensembl Protein Viewer:ENSMUSP00000104305.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108665Re-query CCDS DB by Protein ID:ENSMUSP00000104305
Original member Current member NCBI NM_008192.3 NP_032218.2 Accepted alive Link to Nucleotide Sequence:NM_008192.3Link to Protein Sequence:NP_032218.2Re-query CCDS DB by Nucleotide ID:NM_008192Re-query CCDS DB by Protein ID:NP_032218Link to BLAST:NP_032218.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032218.2 1108 P52785 1108 100% 0 0

Chromosomal Locations for CCDS 24887.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69223035 69223128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69223326 69223411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69223555 69223649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69223769 69223867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69224127 69224301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69224691 69224883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69224970 69225133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69226173 69226321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69227487 69227636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69228043 69228199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69228362 69228568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69230096 69230176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69231532 69231633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69231973 69232075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69232291 69232375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69232685 69233036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69235518 69235822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69235916 69236645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3327 nt):
ATGAGCGCTTGGCTCCTGCCAGCCGGAGGGCTTCCCGGCGCCGGGTTCTGTGTCCCTGCGCGGCAGTCTC
CGTCCAGTTTCTCGCGGGTCCTGCGCTGGCCAAGGCCTGGGCTACCGGGACTCCTGCTACTGCTACTGCT
CCCATCTCCTTCTGCCCTCTCTGCTGTGTTCAAAGTGGGGGTGCTGGGCCCCTGGGCTTGCGACCCCATC
TTTGCACGGGCCCGACCAGACCTGGCTGCGCGTCTGGCCGCCAACCGCCTGAATCGTGACTTTGCTTTAG
ACGGCGGCCCCCGGTTCGAGGTTGCGCTGCTCCCAGAGCCCTGCCTGACTCCGGGCTCACTAGGGGCTGT
GTCCTCTGCGCTGTCTCGAGTCTCTGGCCTGGTGGGTCCGGTGAACCCCGCAGCCTGTCGGCCAGCCGAA
CTGTTGGCTCAAGAAGCTGGAGTAGCGCTGGTGCCCTGGGGCTGCCCTGGCACGCGGGCGGCGGGTACTA
CAGCCCCGGCGGTGACCCCCGCTGCAGATGCTCTCTACGTCCTCCTTAGAGCATTCCGCTGGGCGCGCGT
GGCCCTGATCACTGCACCCCAAGACCTGTGGGTGGAGGCGGGACGCGCTCTGTCCACAGCACTCAGGGCC
CGGGGTTTGCCAGTTGCCCTAGTGACTTCCATGGAGACTTCAGACCGGTCTGGAGCCCGGGAGGCCCTCG
GGAGGATCCGAGATGGGCCTAGAGTTAGAGTAGTGATCATGGTGATGCACTCGGTGCTGCTGGGCGGCGA
GGAGCAGCGCTACCTACTGGAAGCTGCAGAAGAACTGGCTCTGACTGATGGCTCCCTGGTTTTCCTGCCC
TTCGACACGCTTCACTACGCTTTGTCTCCAGGCCCGGAGGCTCTGGCTGCATTTGTCAACAGCTCCCAGC
TCCGCAGGGCTCACGATGCGGTGCTCACACTCACGCGCCGCTGTCCTCCTGGAGGCAGCGTGCAAGACAG
CCTGCGCAGGGCTCAAGAACACCAGGAACTGCCCCTTGACCTCAACCTGAAGCAGGTCTCTCCGCTGTTT
GGCACCATCTATGATGCTGTCTTCCTGTTGGCTGGGGGCGTGAAGAGAGCAAGAACAGCGGTGGGTGGTG
GCTGGGTGTCAGGTGCATCTGTAGCCCGCCAAGTACGGGAAGCACAAGTCTCTGGCTTTTGTGGGGTCCT
GGGAAGAACCGAGGAGCCCTCCTTTGTGCTGCTGGACACAGATGCATCCGGAGAACAGTTGTTCGCAACA
CACCTGCTAGATCCTGTCTTAGGCTCCCTGCGTTCTGCAGGGACCCCCATGCACTTCCCTAGAGGTGGAC
CTGCCCCGGGACCAGACCCTTCCTGCTGGTTCGATCCAGATGTGATCTGCAACGGAGGGGTGGAGCCAGG
CCTGGTCTTTGTTGGCTTCCTCCTGGTGATAGGGATGGGACTGACTGGAGCCTTCTTGGCTCATTACTTG
AGGCACAGGCTGCTACACATGCAGATGGCTTCCGGCCCCAACAAGATCATCTTGACGTTGGAAGATGTTA
CTTTCCTCCACCCACCGGGAGGCAGCTCTCGAAAGGTGGTCCAGGGAAGTAGATCCAGTCTGGCTACCCG
GAGCGCATCAGACATTCGCAGTGTCCCCAGCCAGCCCCAAGAGAGCACCAACGTTGGCCTCTATGAGGGG
GACTGGGTTTGGCTGAAGAAGTTCCCAGGGGAACATCATATGGCTATCAGGCCAGCAACAAAGACAGCCT
TCTCCAAGCTTCGAGAGCTCCGGCATGAGAATGTGGCTCTCTACTTGGGACTCTTCCTGGCGGGTACAGC
AGACAGCCCTGCCACCCCTGGGGAGGGCATCTTGGCTGTGGTCTCAGAGCACTGTGCTCGGGGTTCCCTC
CATGACCTCCTGGCCCAGAGAGAAATAAAGCTGGACTGGATGTTCAAGTCTTCCCTCCTGCTGGACCTCA
TCAAGGGAATGAGATATCTGCACCATCGCGGTGTGGCCCACGGGAGGCTCAAGTCACGGAATTGCGTGGT
GGACGGGAGGTTCGTGCTCAAGGTGACAGATCATGGCCATGGGCGACTGCTGGAAGCGCAAAGGGTGTTA
CCGGAACCTCCCAGTGCAGAGGATCAGCTATGGACAGCCCCAGAGCTTCTTCGGGACCCCTCCCTGGAGC
GCCGGGGAACTCTAGCTGGTGATGTCTTTAGTCTGGCCATCATCATGCAGGAGGTCGTGTGCCGCAGCAC
CCCTTATGCCATGCTGGAACTAACGCCCGAGGAAGTAATACAGAGGGTGCGGAGCCCTCCTCCACTGTGT
CGGCCCTTGGTGTCCATGGACCAGGCACCCATGGAGTGCATCCAGCTGATGACACAATGCTGGGCAGAGC
ATCCAGAACTTCGGCCTTCCATGGACCTCACCTTTGACCTGTTCAAGAGCATCAACAAGGGCCGGAAGAC
CAACATCATCGACTCCATGCTTCGGATGCTGGAGCAGTACTCTAGTAACCTGGAGGATCTGATCCGAGAA
CGCACAGAGGAGTTAGAGCAGGAGAAGCAGAAGACAGACAGGCTGCTCACACAGATGCTGCCTCCATCTG
TGGCTGAGGCCCTGAAGATGGGGACATCTGTGGAGCCTGAGTACTTTGAAGAGGTGACACTCTACTTCAG
TGACATCGTGGGCTTTACCACCATTTCAGCCATGAGCGAGCCTATTGAGGTGGTAGACCTGCTTAATGAC
CTCTATACTCTCTTCGATGCCATCATCGGTGCCCATGATGTCTATAAGGTGGAAACAATTGGAGATGCAT
ATATGGTGGCCTCCGGGCTGCCGCAGAGGAACGGGCAGCGGCACGCTGCAGAGATTGCCAACATGTCACT
GGACATCCTCAGTGCAGTCGGCTCCTTCCGCATGCGCCATATGCCCGAGGTACCGGTGCGCATCCGCATT
GGTTTGCACTCAGGCCCGTGCGTGGCGGGTGTGGTGGGCCTCACCATGCCTCGGTACTGCCTGTTCGGGG
ACACGGTCAACACTGCCTCGAGAATGGAGTCCACTGGACTGCCTTACCGCATCCACGTTAACATGAGCAC
TGTTCGGATTCTTCGCGCTCTGGACCAAGGCTTCCAGATGGAGTGTCGAGGCCGCACGGAGCTGAAGGGC
AAGGGTATTGAGGACACGTACTGGCTTGTGGGCAGACTTGGCTTCAACAAGCCCATTCCCAAACCACCTG
ATCTGCAGCCAGGGGCCAGCAACCATGGTATCAGCCTGCAGGAGATTCCCCCAGAGAGACGCAAGAAGCT
GGAGAAAGCCAGGCCAGGCCAGTTTACTGGGAAGTGA

Translation (1108 aa):
MSAWLLPAGGLPGAGFCVPARQSPSSFSRVLRWPRPGLPGLLLLLLLPSPSALSAVFKVGVLGPWACDPI
FARARPDLAARLAANRLNRDFALDGGPRFEVALLPEPCLTPGSLGAVSSALSRVSGLVGPVNPAACRPAE
LLAQEAGVALVPWGCPGTRAAGTTAPAVTPAADALYVLLRAFRWARVALITAPQDLWVEAGRALSTALRA
RGLPVALVTSMETSDRSGAREALGRIRDGPRVRVVIMVMHSVLLGGEEQRYLLEAAEELALTDGSLVFLP
FDTLHYALSPGPEALAAFVNSSQLRRAHDAVLTLTRRCPPGGSVQDSLRRAQEHQELPLDLNLKQVSPLF
GTIYDAVFLLAGGVKRARTAVGGGWVSGASVARQVREAQVSGFCGVLGRTEEPSFVLLDTDASGEQLFAT
HLLDPVLGSLRSAGTPMHFPRGGPAPGPDPSCWFDPDVICNGGVEPGLVFVGFLLVIGMGLTGAFLAHYL
RHRLLHMQMASGPNKIILTLEDVTFLHPPGGSSRKVVQGSRSSLATRSASDIRSVPSQPQESTNVGLYEG
DWVWLKKFPGEHHMAIRPATKTAFSKLRELRHENVALYLGLFLAGTADSPATPGEGILAVVSEHCARGSL
HDLLAQREIKLDWMFKSSLLLDLIKGMRYLHHRGVAHGRLKSRNCVVDGRFVLKVTDHGHGRLLEAQRVL
PEPPSAEDQLWTAPELLRDPSLERRGTLAGDVFSLAIIMQEVVCRSTPYAMLELTPEEVIQRVRSPPPLC
RPLVSMDQAPMECIQLMTQCWAEHPELRPSMDLTFDLFKSINKGRKTNIIDSMLRMLEQYSSNLEDLIRE
RTEELEQEKQKTDRLLTQMLPPSVAEALKMGTSVEPEYFEEVTLYFSDIVGFTTISAMSEPIEVVDLLND
LYTLFDAIIGAHDVYKVETIGDAYMVASGLPQRNGQRHAAEIANMSLDILSAVGSFRMRHMPEVPVRIRI
GLHSGPCVAGVVGLTMPRYCLFGDTVNTASRMESTGLPYRIHVNMSTVRILRALDQGFQMECRGRTELKG
KGIEDTYWLVGRLGFNKPIPKPPDLQPGASNHGISLQEIPPERRKKLEKARPGQFTGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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