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Report for CCDS24984.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24984.2 Public Mus musculus 11 Xaf1 23 108 98 CCDS HistoryNCBI Gene:327959Re-query CCDS DB by CCDS ID:24984.2Re-query CCDS DB by GeneID:327959See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 24984.1
The coding region has been updated to extend the C-terminus to one that is more supported by the available transcript, protein and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 24984.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000146233.7 ENSMUSP00000123011.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146233.7Link to Ensembl Protein Viewer:ENSMUSP00000123011.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000146233Re-query CCDS DB by Protein ID:ENSMUSP00000123011
Original member Current member NCBI NM_001037713.4 NP_001032802.2 Accepted alive Link to Nucleotide Sequence:NM_001037713.4Link to Protein Sequence:NP_001032802.2Re-query CCDS DB by Nucleotide ID:NM_001037713Re-query CCDS DB by Protein ID:NP_001032802Link to BLAST:NP_001032802.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032802.2 273 Q5NBU8-1 273 100% 0 0

Chromosomal Locations for CCDS 24984.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72301678 72301709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72303327 72303462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72304666 72304861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72306564 72306652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72308607 72308924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72311956 72312006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGGAGGCTGACTTCCAAGTGTGCAGGAACTGCAAAAGAAATGTGGCCTCTCTCCACTTCATGCTCCACG
AGGCCCACTGCCTGCGCTTCATAGTCCTTTGCCCAGAATGTGAAGAGCCCATCCCAGAGTCAAAGATGAA
AGAGCACATGGAAGTTGTGCACCAGCAGACCAAGGAAAGCCAACAGCACCCTGCCAAGTGCAAGTTCTGT
GAGCTGGCCGTGCAGCTTAGCAATCTGGATGTCCATGAGTCCCACTGTGGCAGCCGGACAGAGCATTGTC
CACACTGCAACCAGCCCATCACACTCCAAGTACTGTCTCAGCACAAAGCCATGTGTCTGAGTGCAAAGGG
CAGGCCTGAGGAAGGGAAGAGAATTGTATCATCTCCTGGAAGAAAAACCCGTTGTGATCTTTGCAAACAA
ATGATTCCAGAAAATACGTATGCCTCCCATATGAAACAATGTTCCGCCCCAAACACTGTGACACGTATTC
GGGATGAAAGTATAATAGTCATTCCTTCAACCCTTGCATTTATGGACTCTGGAAATCGAAGATCCACAGT
GAGTAAAGATGTTCGTCCAAAGACAAAAAATAGAAACAGCTCAACAAAGCGAGAGACAAAAAAACAAAAT
GGCACTGTGGCTCTGCCTTTGAAGTCTGGGCTCCAGCAGAGGGCTGATCTTCCCACAGGAGACGAGACGG
CCTATGACACTCTCCAGAACTGTTGTCAGTGCCGAATTTTACTTCCCTTGCCCATTCTAAATGAGCACCA
GGAGAAGTGCCAGAGGTTAGCTCACCAAAAGAAACTCCAGTGGGGCTGGTGA

Translation (273 aa):
MEADFQVCRNCKRNVASLHFMLHEAHCLRFIVLCPECEEPIPESKMKEHMEVVHQQTKESQQHPAKCKFC
ELAVQLSNLDVHESHCGSRTEHCPHCNQPITLQVLSQHKAMCLSAKGRPEEGKRIVSSPGRKTRCDLCKQ
MIPENTYASHMKQCSAPNTVTRIRDESIIVIPSTLAFMDSGNRRSTVSKDVRPKTKNRNSSTKRETKKQN
GTVALPLKSGLQQRADLPTGDETAYDTLQNCCQCRILLPLPILNEHQEKCQRLAHQKKLQWGW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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