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Report for CCDS25025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25025.1 Public Mus musculus 11 Or3a1b 23 108 98 CCDS HistoryNCBI Gene:258701Re-query CCDS DB by CCDS ID:25025.1Re-query CCDS DB by GeneID:258701See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25025.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079827.1 ENSMUSP00000078756.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079827.1Link to Ensembl Protein Viewer:ENSMUSP00000078756.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000079827Re-query CCDS DB by Protein ID:ENSMUSP00000078756
Original member Current member EBI ENSMUST00000213754.1 ENSMUSP00000149542.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213754.1Link to Ensembl Protein Viewer:ENSMUSP00000149542.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213754Re-query CCDS DB by Protein ID:ENSMUSP00000149542
Original member Current member NCBI NM_146706.1 NP_666917.1 Accepted alive Link to Nucleotide Sequence:NM_146706.1Link to Protein Sequence:NP_666917.1Re-query CCDS DB by Nucleotide ID:NM_146706Re-query CCDS DB by Protein ID:NP_666917Link to BLAST:NP_666917.1

Chromosomal Locations for CCDS 25025.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 74121291 74122238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGCAGCCAAAGCCAAGAGCCAACGGAACCACTGTTACTGAATTCATTCTGCTAGGTTTGGTGGAAACAC
CAGAGCTGTGGCCACTTGTCTTCATACTCTTCCTCTTGGCTTACATGACCACAGTTGGAGGCAACCTGAG
CATCCTGGCAGCTGTCTTGGTGGAACCCAAACTGCACACCCACATGTACTTCTTCCTGGGGAATCTGTCA
GTGATGGATGTGGGGTGCATCAGTGTCACTATTCCCTCTATGTTGGGTCGGCTCTTGGCCCACAGGCTTA
CAGTTCCATATGGAGCTTGTCTCACACAGCTCTTCTTCTTCCATCTGCTGGCTGGGGTTGACTGCTTCTT
GTTGACAGCCATGGCTTACGACCGCTTCCTAGCCATCTGCCAGCCCCTCACCTATAGCACCCGAATGAAC
CATTCAGTGCAGAGAATTTTGGTGGCCTCATCCTGGGCTTGTTCCTTCAGCAATGCACTAACCCACACTG
TGGCGACATCCACACTTCGCTTCTGTGGTCCCAATGTGATTGACAACTTCTACTGCGACCTTCCTCAGCT
CTTCCAGCTCTCCTGCTCCAGTACCCAGATCAATGAGCTGCTACTCTTTGCACTGAGTTTCATAATGGCA
GGAACCCCCATGGCACTCATTTTTACCTCTTATATCAATGTGGCAGCTGCAGTTCTGCGAATCCGCTCTG
CTGAAGGCAGGAAGAAAGCTTTCTCCACATGCAGCTCTCACCTCACTGTGGTTGCCATGTTCTATGGTAC
AGGCATGTTTAACTACATGAGACTGGGTTCCACCAAACTTTCAGATAAGGATAAAGCTATTGGTATTTTC
AACACTGTCATCAACCCTATGCTAAACCCACTCATCTACAGTCTTAGGAACCCTGATGTGCAGGCTGCCC
TCTGGAGGGTACTCACAGGCAGACGACCAGCAGCTTGA

Translation (315 aa):
MQPKPRANGTTVTEFILLGLVETPELWPLVFILFLLAYMTTVGGNLSILAAVLVEPKLHTHMYFFLGNLS
VMDVGCISVTIPSMLGRLLAHRLTVPYGACLTQLFFFHLLAGVDCFLLTAMAYDRFLAICQPLTYSTRMN
HSVQRILVASSWACSFSNALTHTVATSTLRFCGPNVIDNFYCDLPQLFQLSCSSTQINELLLFALSFIMA
GTPMALIFTSYINVAAAVLRIRSAEGRKKAFSTCSSHLTVVAMFYGTGMFNYMRLGSTKLSDKDKAIGIF
NTVINPMLNPLIYSLRNPDVQAALWRVLTGRRPAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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