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Report for CCDS25049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25049.1 Public Mus musculus 11 Rilp 23 108 98 CCDS HistoryNCBI Gene:280408Re-query CCDS DB by CCDS ID:25049.1Re-query CCDS DB by GeneID:280408See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25049.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042972.6 ENSMUSP00000037238.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042972.6Link to Ensembl Protein Viewer:ENSMUSP00000037238.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042972Re-query CCDS DB by Protein ID:ENSMUSP00000037238
Original member Current member NCBI NM_001029938.2 NP_001025109.1 Accepted alive Link to Nucleotide Sequence:NM_001029938.2Link to Protein Sequence:NP_001025109.1Re-query CCDS DB by Nucleotide ID:NM_001029938Re-query CCDS DB by Protein ID:NP_001025109Link to BLAST:NP_001025109.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025109.1 369 Q5ND29 369 100% 0 0

Chromosomal Locations for CCDS 25049.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 75510148 75510372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75510444 75510537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75510632 75510738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75510822 75511007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75511289 75511434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75511780 75511902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75512351 75512434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75512699 75512843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGGAGCCCAGGAGGGCAGCGCCCAGGCTACCCAGTCAGGCCTCTTCTTCAGTGGGCGCAGGGTCAGCCG
CCGAGCTCGTGTACCATCTAGCGGGGGCTCTGGGCACTGAGCTACAGGGGCTGGCACGCCGCTTCGGACC
CGACGCGGCGGCTGGGCTGGTGCCACTAGTCGTGCGGGCGCTGGAGCTCTTGGAAAAGGCCGCCGTGGGG
CCGGCTCCGGACTCGCTGCAGGTGTCCGCACAGCAGGCAGAAGTGGAGCTGCGGCGGCTGCGCGAGGAGA
ACCAACGCCTCCGCCAGGAGCTAGGCTCCGGGCCGCAGGAGGAGCGCGCGCTGCTCCGACAGCTCAAGGA
GGTGACAGACAGACAGCGGGATGAGCTTCGGGCACACAACCGAGATCTGCAGCGCCGAAGCCAAGAGACC
GAAGCGCTGCAGGAACAGCTACAGCGCCTCCTGCTGATCAACTCTGAGCTGCGGCACAAGCTGGCTGCAG
TGCAGACCCAGTTGAGGGCCGCCCAGGACCGGGAGAGGGAGCGCCAGATAGCTCAGGATGGCTCCAGCCA
GCTGGCTAAAGAACAGAGCTTGGAACCTGATGCGGCAACCTCAGATGACCCGGTGGATACTCAGAAGCAG
CCAGGGAACCTTCCAGAAGCTGTCCAGTGTGGATTCAGCAGGGAAGAGCTTAAGCAAATCCTTCAGGAGC
GGAATGAGCTCAAAGCCAACGTGTTCTTGCTCAAGGAGGAGTTGGCGTACTTCCAGCGAGAGCTGCTCAC
AGATCACCGTGTTCCTGGGCTTCTGCTTGAAGCCATGAAGGTGGCAGTCAAGAAACAGAGGAGGAAGATC
AAGGCCAAGATGTTAGGGACACCTGAAGAAGCAGAGAGCAGTGAGGATGAGGATGGCTCGTGGCTCCTGC
TCTCCAACGACAAGGAAGATGTTCCCCTAGTTCCTGAGTCCAGAATCCAGAATTTCTTTGGCTTATGGTA
TCGGGGTGAAACTGAGGCCCCTGAAGCCGAGACCAGCAACCCAGCTTCCAGCAGCCTACAGAAAGGAGAA
GAGACCCCACAGCAACCCCACCTGCAGCCTGTGAACAGCCCTCCAGCCCCCAACTCCTGA

Translation (369 aa):
MEPRRAAPRLPSQASSSVGAGSAAELVYHLAGALGTELQGLARRFGPDAAAGLVPLVVRALELLEKAAVG
PAPDSLQVSAQQAEVELRRLREENQRLRQELGSGPQEERALLRQLKEVTDRQRDELRAHNRDLQRRSQET
EALQEQLQRLLLINSELRHKLAAVQTQLRAAQDRERERQIAQDGSSQLAKEQSLEPDAATSDDPVDTQKQ
PGNLPEAVQCGFSREELKQILQERNELKANVFLLKEELAYFQRELLTDHRVPGLLLEAMKVAVKKQRRKI
KAKMLGTPEEAESSEDEDGSWLLLSNDKEDVPLVPESRIQNFFGLWYRGETEAPEAETSNPASSSLQKGE
ETPQQPHLQPVNSPPAPNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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