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Report for CCDS25072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25072.1 Public Mus musculus 11 Tmigd1 23 108 98 CCDS HistoryNCBI Gene:66601Re-query CCDS DB by CCDS ID:25072.1Re-query CCDS DB by GeneID:66601See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25072.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072633.3 ENSMUSP00000072427.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072633.3Link to Ensembl Protein Viewer:ENSMUSP00000072427.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000072633Re-query CCDS DB by Protein ID:ENSMUSP00000072427
Original member Current member EBI ENSMUST00000102495.7 ENSMUSP00000099553.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102495.7Link to Ensembl Protein Viewer:ENSMUSP00000099553.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102495Re-query CCDS DB by Protein ID:ENSMUSP00000099553
Original member NCBI NM_025655.2 NP_079931.1 Updated not alive Link to Nucleotide Sequence:NM_025655.2Link to Protein Sequence:NP_079931.1Re-query CCDS DB by Nucleotide ID:NM_025655Re-query CCDS DB by Protein ID:NP_079931
Current member NCBI NM_025655.3 NP_079931.1 Accepted alive Link to Nucleotide Sequence:NM_025655.3Link to Protein Sequence:NP_079931.1Re-query CCDS DB by Nucleotide ID:NM_025655Re-query CCDS DB by Protein ID:NP_079931Link to BLAST:NP_079931.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079931.1 261 Q9D7L8 261 100% 0 0

Chromosomal Locations for CCDS 25072.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 76904568 76904646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76906913 76907191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76910047 76910325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76913974 76914077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76915455 76915495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76916026 76916029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGTGTGGAAGATCACCGGGCCACTGCAAGCATGCCAGCTTCTCTTAGTGGTTTTATCTTTGCCACAGG
GGAGAACAAGCTCTGTTTTAACTGTGAATGGTAGAACTGAGAACTATATTCTGGACACTCAACATGGTGT
CCAAGCATCTCTGGAATGTGCTGTTCAAAACCACACCGAGGATGAAGAACTTCTCTGGTACAGAGAAGAT
GGAATAGTAGATCTGAAAAATGGAAACAAAATCAACATCAGTTCTGTTTGTGTCTCTCCCATCAACGAAA
GTGACAATGGAGTCCGCTTTACCTGCAAGCTACAGCGCGATCAGACGGTGTCCGTTACAGTAGTGCTGAA
CGTTACCTTTCCTCCTCTTCTAAGTGGCAATGGCTTCCAAACCGTGGAGGAAAACAGCGATGTAAGTTTG
GTTTGCAACGTGAAATCCAACCCTCAAGCGCAAATGATGTGGTATAAAAACAACAGCGCCTTGGTTTTAG
AGAAAGGCCGTCACCAAATCCACCAGACAAGGGAGTCTTTTCAGTTGTCCATCACCAAAGTCAAGAAATC
TGACAATGGGACCTACAGCTGTATTGCCAGCTCATCTCTGAAAATGGAGACCATGGACTTCCACCTGCTT
GTTAAAGACAAAGTTTTTGTCATGCCGGCAGAGCCCATCATTGCTGCTTGTGTCGTGGTCGTCCTGACGA
TGGCTTTTGCCCTGTTTTCTAGGAGGAAAAGAATAATGAAGCTCTGTGGGAAAAAGAATGACCCGAATTC
AGAAACAGCTCTATAA

Translation (261 aa):
MVWKITGPLQACQLLLVVLSLPQGRTSSVLTVNGRTENYILDTQHGVQASLECAVQNHTEDEELLWYRED
GIVDLKNGNKINISSVCVSPINESDNGVRFTCKLQRDQTVSVTVVLNVTFPPLLSGNGFQTVEENSDVSL
VCNVKSNPQAQMMWYKNNSALVLEKGRHQIHQTRESFQLSITKVKKSDNGTYSCIASSSLKMETMDFHLL
VKDKVFVMPAEPIIAACVVVVLTMAFALFSRRKRIMKLCGKKNDPNSETAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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