CCDS Report for Consensus CDS

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Report for CCDS25087.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
25087.1	Public	Mus musculus	11	Sez6	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25087.1

Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status
EBI	ENSMUST00000093995.9	ENSMUSP00000091532.3	Accepted	alive
NCBI	NM_021286.4	NP_067261.2	Updated	not alive
NCBI	NM_021286.5	NP_067261.2	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_067261.2	991	Q7TSK2-1	991	100%	0	0

Chromosomal Locations for CCDS 25087.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)

Genome Browser links:

Chromosome	Start	Stop
11	77931060	77931114
11	77953408	77954067
11	77954750	77954883
11	77962855	77963050
11	77968902	77969087
11	77972848	77973016
11	77973094	77973260
11	77973783	77973977
11	77974191	77974329
11	77974440	77974636
11	77975146	77975340
11	77976472	77976663
11	77976744	77976941
11	77977245	77977283
11	77977537	77977654
11	77977742	77977844
11	77978013	77978045

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2976 nt):
ATGCGCCCAGCAGCCCTGCTGCTCCTGCCCTCGCTGCTGGCGCTCCTGGCTCACGGACTCTCCTCAGAGG CTCCGATCACGGGGGAAGGTCATGCCACGGGCATCAGGGAGACGGATGGGGAGCTGACCGCAGCCCCTAC ACCTGAGCAGTCAGACCGAGGCGTCCACTTCGTCACCACAGCCCCTACCCTCAAGCTGCTCAACCACCAC CCACTTCTGGAAGAATTTCTTCAAGAGGGGCTAGAAAGAGAGGAAGCGCCGCAGCCTGCACTGCCCTTCC AGCCGGACTCACCTACACACTTTACTCCAAGCCCCCTCCCCCGCCTCACCAACCAGGACAACCGCCCCGT CTTTACCAGTCCGACTCCAGCCGTGGCTGCAGCACCCACCCAGCCCCACTCCAGGGAGAAACCTTGGAAC CTAGAATCCAAACCCCCTGAGCTTTCTATCACATCGTCCCTTCCTCCAGGGCCGAGTATGGCAGTGCCCA CACTGCTCCCAGAGGACAGACCCAGTACTACACCCCCTAGCCAAGCATGGACTCCAACTCAGGAGGGTCC TGGAGACATGGACAGACCTTGGGTTCCAGAGGTCATGTCTAAGACCACAGGGCTTGGTGTCGAGGGAACC ATTGCCACCTCCACAGCTTCAGGGGATGACGAAGAGACCACTACCACCATCATTACCACTACTGTCACCA CAGTTCAGCCACCAGGCCCCTGTAGCTGGAATTTCTCAGGCCCAGAGGGCTCTCTGGATTCCCCCACGGC CCCCAGCTCACCCTCTGATGTTGGCCTGGACTGTTTCTACTATATCTCTGTCTACCCTGGATATGGAGTA GAGATCAAGGTGGAGAACATCAGCCTTCAGGAAGGGGAGACCATCACCGTGGAGGGCCTGGGGGGCCCCG ATCCACTGCCCTTGGCTAACCAGTCGTTCCTGCTGAGGGGCCAGGTCATCCGCAGCCCCACCCACCAAGC AGCCCTGAGGTTCCAGAGCCTCCCGCTACCCGCTGGGCCTGGCACTTTCCATTTCCGCTACCAAGCCTAT CTCCTGAGCTGCCACTTTCCCCGACGTCCAGCGTATGGAGATGTGACTGTCACCAGTCTCCACCCAGGAG GCAGCGCCCACTTCCATTGTGCCACTGGCTACCAGCTCAAGGGTGCCAGGTTCCTCACCTGTCTCAATGC CACCCAGCCCTTTTGGGATTCCCAAGAGCCTGTTTGCATTGCTGCTTGTGGTGGAGTGATTCGGAATGCC ACCACTGGCCGCATTGTCTCTCCTGGCTTCCCGGGGAACTACAGCAACAACCTCACCTGCCACTGGTTGC TAGAGGCTCCAGAGAGCCAGCGGCTGCACCTGCACTTTGAAAAGGTCTCCCTGGCAGAAGACGACGACAG GCTCATCATCCGCAATGGAAATAACGTGGAGGCCCCGCCGGTGTACGACTCCTATGAGGTGGAATACCTG CCCATTGAGGGCCTGCTCAGCTCTGGCAGACACTTCTTCGTGGAGTTCAGTACTGACAGCAGTGGGGCAG CTGCAGGCATGGCCCTGCGCTATGAGGCCTTCCAGCAAGGACATTGCTATGAGCCCTTTGTCAAATACGG CAACTTCAGCAGCAGTGCACCGTCCTACCCTGTGGGTACAACTGTGGAGTTCAGCTGTGACCCTGGCTAC ACCCTGGAGCAGGGCTCCATCATCATCGAATGCGTCGACCTCCACGACCCCCAGTGGAATGAGACAGAGC CAGCCTGCCGAGCCGTGTGCAGCGGGGAGATCACAGACTCTGCAGGCGTGGTGCTCTCTCCAAACTGGCC GGAGCCTTATGGCCGAGGGCAGGACTGCATCTGGGGTGTGCATGTGGAGGAGGACAAGCGCATCATGCTG GACATCCGAGTGCTGCGCATAGGCTCTGGGGATGTACTGACCTTCTACGATGGGGATGACCTCACAGCCC GGGTCCTGGGCCAATACTCAGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCATGGCCGATGTCACCAT CCAGTTCCAGTCAGACCCTGGGACCTCGGCGCTGGGTTACCAGCAAGGATTTGTCATCCACTTCTTTGAG GTTCCCCGCAACGACACATGTCCAGAGCTACCCGAGATCCCCAACGGCTGGAAGAACCCATCACAGCCTG AGCTGGTGCACGGCACGGTGGTCACCTATCAGTGCTACCCTGGTTACCAGGTGGTGGGATCCAGTATTCT CATGTGCCAGTGGGACCTAAGCTGGAGTGAGGACCTGCCTTCATGCCAGAGAGTGACATCTTGCCATGAC CCAGGGGATGTGGAGCACAGCCGACGCCTCATATCCAGCCCCAAGTTTCCCGTGGGAGCAACTGTGCAAT ATGTCTGTGACCAGGGTTTTGTGCTGACGGGGAGTGCCATTCTCACCTGCCATGATCGGCAAGCAGGCAG TCCCAAGTGGAGTGACAGGGCCCCCAAGTGTCTCTTGGAACAATTCAAGCCGTGCCATGGCCTCAGCGCC CCGGAGAATGGTGCCCGCAGCCCTGAGAAGCGGCTTCACCCAGCAGGGGCCACCATCCACTTCTCCTGTG CCCCTGGTTATGTGCTGAAGGGCCAGGCCAGCATCAAATGCGTGCCTGGACACCCCTCGCATTGGAGTGA CCCACCACCCATCTGTAGGGCTGCCTCTCTGGATGGGTTCTACAACGGCCGTAGCCTGGATGTTGCCAAG GCACCTGCCGCCTCCAGTGCCCTGGACGCTGCTCACCTGGCTGCTGCCATCTTCCTACCATTGGTGGCCA TGGTGTTGCTGGTGGGAGGAGTGTACCTCTATTTTTCCAGATTCCAGGGGAAAAGTCCCCTGCAACTTCC CCGAACTCATCCTCGCCCCTATAACCGCATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGACT GGATCTCTTTCCTTTGCAGGAGACGAGAGAATATGA
Translation (991 aa):
MRPAALLLLPSLLALLAHGLSSEAPITGEGHATGIRETDGELTAAPTPEQSDRGVHFVTTAPTLKLLNHH PLLEEFLQEGLEREEAPQPALPFQPDSPTHFTPSPLPRLTNQDNRPVFTSPTPAVAAAPTQPHSREKPWN LESKPPELSITSSLPPGPSMAVPTLLPEDRPSTTPPSQAWTPTQEGPGDMDRPWVPEVMSKTTGLGVEGT IATSTASGDDEETTTTIITTTVTTVQPPGPCSWNFSGPEGSLDSPTAPSSPSDVGLDCFYYISVYPGYGV EIKVENISLQEGETITVEGLGGPDPLPLANQSFLLRGQVIRSPTHQAALRFQSLPLPAGPGTFHFRYQAY LLSCHFPRRPAYGDVTVTSLHPGGSAHFHCATGYQLKGARFLTCLNATQPFWDSQEPVCIAACGGVIRNA TTGRIVSPGFPGNYSNNLTCHWLLEAPESQRLHLHFEKVSLAEDDDRLIIRNGNNVEAPPVYDSYEVEYL PIEGLLSSGRHFFVEFSTDSSGAAAGMALRYEAFQQGHCYEPFVKYGNFSSSAPSYPVGTTVEFSCDPGY TLEQGSIIIECVDLHDPQWNETEPACRAVCSGEITDSAGVVLSPNWPEPYGRGQDCIWGVHVEEDKRIML DIRVLRIGSGDVLTFYDGDDLTARVLGQYSGPRGHFKLFTSMADVTIQFQSDPGTSALGYQQGFVIHFFE VPRNDTCPELPEIPNGWKNPSQPELVHGTVVTYQCYPGYQVVGSSILMCQWDLSWSEDLPSCQRVTSCHD PGDVEHSRRLISSPKFPVGATVQYVCDQGFVLTGSAILTCHDRQAGSPKWSDRAPKCLLEQFKPCHGLSA PENGARSPEKRLHPAGATIHFSCAPGYVLKGQASIKCVPGHPSHWSDPPPICRAASLDGFYNGRSLDVAK APAASSALDAAHLAAAIFLPLVAMVLLVGGVYLYFSRFQGKSPLQLPRTHPRPYNRITVESAFDNPTYET GSLSFAGDERI

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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