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Report for CCDS25131.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25131.1 Public Mus musculus 11 Rhbdl3 23 108 98 CCDS HistoryNCBI Gene:246104Re-query CCDS DB by CCDS ID:25131.1Re-query CCDS DB by GeneID:246104See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25131.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017836.7 ENSMUSP00000017836.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017836.7Link to Ensembl Protein Viewer:ENSMUSP00000017836.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000017836Re-query CCDS DB by Protein ID:ENSMUSP00000017836
Original member Current member NCBI NM_139228.3 NP_631974.1 Accepted alive Link to Nucleotide Sequence:NM_139228.3Link to Protein Sequence:NP_631974.1Re-query CCDS DB by Nucleotide ID:NM_139228Re-query CCDS DB by Protein ID:NP_631974Link to BLAST:NP_631974.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631974.1 404 P58873 404 100% 0 0

Chromosomal Locations for CCDS 25131.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 80301161 80301271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80302664 80302687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80319558 80319716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80323359 80323583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80330557 80330705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80331795 80331907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80337487 80337587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80346826 80346886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80353412 80353683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGGGCGAGCACCCCAGCCCCGGCCCCGCAGTGGCCGCCTGCGCGGAGGCTGAGCGCATCGAGGAGCTGG
AGCCCGAGGCCGAGGAGCGACTGCCCGCCGCGCCAGAAGACCACTGGAAAGTCCTGTTTGAAAAGTTTGA
CCCTGGAAGCACCGGCTACATCAGCACAGGAAAGTTCCGGAGCCTCCTGGAGAGCCACAGCTCTAAGCTG
GACCCACACAAAAAGGAGGTGCTCCTGGCTCTCGCAGACAGCCATGCAGATGGGCAGATCTGCTACCAGG
ACTTTGTCAACCTGATGAGCAACAAACGTTCCAACAGCTTCCGCCAGGCCATCCTTCAGGGAAACCGCAG
GCTGAGCAGCAAGGCCCTGCTGGAGGAGAAGGGGCTGAGCCTCTCTCAGCGGCTCATCCGCCACGTGGCC
TACGAGACTCTGCCCCGGGAGATTGACCGCAAGTGGTACTATGACAGCTACACCTGCTGCCCTCCGCCCT
GGTTCATGATCACAATCACGCTGCTGGAGGTTGCCCTTTTCCTGTACAACGGGGTCCTACTAGATCAGTT
TGTGCTGCAGGTGACGCACCCTCGATACCTGAAGAACTCTCTGGTTTACCACCCGCAGCTCCGTGCGCAG
GCTTGGCGCTATGTGACGTACATCTTCATGCATGCAGGGGTGGAACAGCTGGGACTCAATGTGGCACTGC
AGCTGCTGGTAGGGGTACCCCTGGAGATGGTGCATGGAGCCACCCGAATTGGGCTTGTCTACGTGGCCGG
TGTTGTGGCAGGCTCCTTGGCGGTGTCTGTGGCTGACATGACTGCACCTGTTGTGGGCTCTTCCGGAGGG
GTGTATGCGCTCGTCTCTGCCCACCTAGCCAACATTGTCATGAACTGGTCAGGCATGAAGTGCCAGTTCA
AGCTGCTGCGGATGGCTGTGGCCTTGATCTGTATGAGTATGGAGTTCGGAAGGGCTGTATGGCTCCGTTT
CCACCCATCGGCTTATCCCCCGTGCCCCCACCCAAGCTTTGTGGCACACTTGGGTGGCGTGGCCGTGGGC
ATCACCCTGGGCGTGGTGGTTCTCAGAAATTACGAGCAGAGGCTGCAGGACCAGTCGCTGTGGTGGATCT
TTGTGACCATGTACACCATCTTCGTGCTGTTTGCTGTCTTCTGGAACATCTTTGCCTACACACTGCTGGA
CTTGAAGCTGCCACCCGCCCCCTAA

Translation (404 aa):
MGEHPSPGPAVAACAEAERIEELEPEAEERLPAAPEDHWKVLFEKFDPGSTGYISTGKFRSLLESHSSKL
DPHKKEVLLALADSHADGQICYQDFVNLMSNKRSNSFRQAILQGNRRLSSKALLEEKGLSLSQRLIRHVA
YETLPREIDRKWYYDSYTCCPPPWFMITITLLEVALFLYNGVLLDQFVLQVTHPRYLKNSLVYHPQLRAQ
AWRYVTYIFMHAGVEQLGLNVALQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSVADMTAPVVGSSGG
VYALVSAHLANIVMNWSGMKCQFKLLRMAVALICMSMEFGRAVWLRFHPSAYPPCPHPSFVAHLGGVAVG
ITLGVVVLRNYEQRLQDQSLWWIFVTMYTIFVLFAVFWNIFAYTLLDLKLPPAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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