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Report for CCDS25179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25179.1 Public Mus musculus 11 Hnf1b 23 108 98 CCDS HistoryNCBI Gene:21410Re-query CCDS DB by CCDS ID:25179.1Re-query CCDS DB by GeneID:21410See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25179.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021016.9 ENSMUSP00000021016.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021016.9Link to Ensembl Protein Viewer:ENSMUSP00000021016.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000021016Re-query CCDS DB by Protein ID:ENSMUSP00000021016
Original member Current member NCBI NM_009330.3 NP_033356.2 Accepted alive Link to Nucleotide Sequence:NM_009330.3Link to Protein Sequence:NP_033356.2Re-query CCDS DB by Nucleotide ID:NM_009330Re-query CCDS DB by Protein ID:NP_033356Link to BLAST:NP_033356.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033356.2 558 P27889-1 558 100% 0 0

Chromosomal Locations for CCDS 25179.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83851049 83851392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83855904 83856103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83861716 83861980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83863943 83864178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83882653 83882813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83889049 83889184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83893382 83893576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83896222 83896340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83904911 83904931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGGTGTCCAAGCTCACGTCGCTCCAGCAAGAACTCCTGAGTGCCCTGCTGAGCTCCGGAGTCACCAAGG
AAGTGCTGATCCAGGCCTTGGAGGAGTTACTGCCGTCCCCGAATTTCGGGGTGAAGCTGGAGACACTGCC
CCTGTCCCCCGGGAGCGGGGCGGATCTCGACACCAAGCCGGTTTTCCATACTCTCACCAATGGCCACGCC
AAGGGCCGCTTGTCTGGGGACGAGGGCTCAGAGGACGGCGACGACTATGACACTCCTCCCATCCTCAAAG
AGCTCCAGGCGCTCAACACCGAGGAGGCCGCGGAGCAGCGGGCCGAGGTGGACCGGATGCTCAGCGAGGA
CCCGTGGAGGGCTGCCAAAATGATCAAGGGATACATGCAACAGCACAATATCCCCCAGAGGGAGGTGGTC
GATGTCACAGGCCTGAACCAATCCCACCTCTCTCAACACCTCAACAAGGGCACCCCCATGAAGACCCAGA
AGAGAGCTGCCCTGTACACTTGGTACGTCAGAAAGCAACGGGAGATCCTCCGACAGTTCAACCAGACAGT
CCAGAGCTCTGGAAACATGACAGACAAAAGCAGTCAGGATCAGCTGCTGTTTCTCTTTCCAGAGTTCAGT
CAACAGAACCAGGGGCCTGGGCAGTCGGAGGACACCTGCTCCGAGCCCACCAACAAGAAGATGCGCCGCA
ACCGGTTTAAATGGGGGCCCGCATCCCAGCAAATTTTGTACCAGGCCTACGACCGGCAAAAGAATCCCAG
CAAGGAAGAGAGGGAGGCCTTAGTGGAGGAGTGTAACAGGGCAGAATGTTTGCAACGAGGGGTCTCCCCT
TCCAAAGCCCACGGCCTAGGCTCCAACTTGGTCACGGAGGTCCGTGTCTACAACTGGTTCGCAAACCGCC
GGAAGGAAGAGGCGTTCAGGCAGAAGCTGGCCATGGATGCCTATAGCTCCAACCAGACGCACAACCTGAA
CCCCCTGCTCACCCATGGCTCCCCTCACCATCAGCCAAGCTCCTCTCCACCCAACAAGATGTCAGGAGTG
CGCTACAACCAGCCGGGAAACAATGAGGTCACTTCCTCTTCGACAATCAGTCACCATGGTAACAGTGCCA
TGGTGACCAGCCAGTCGGTTTTACAGCAAGTCTCCCCAGCCAGCCTGGACCCAGGCCACAGTCTCCTCTC
ACCTGACAGTAAAATGCAGATCACAGTGTCGGGAGGAGGACTGCCTCCCGTCAGCACCTTGACGAATATC
CACAGCCTCTCCCACCACAATCCCCAGCAATCTCAGAACCTCATCATGACCCCCCTGTCTGGAGTCATGG
CCATTGCACAGAGCCTCAACACCTCCCAAGCCCAGGGTGTCCCGGTCATTAACAGTGTGGCTAGCAGCCT
GGCAGCCCTACAGCCCGTCCAGTTCTCTCAACAGCTGCACAGCCCTCACCAGCAGCCCCTCATGCAGCAG
AGCCCAGGCAGTCACATGGCCCAGCAGCCCTTCATGGCCGCGGTGACTCAGCTACAGAACTCCCACATGT
ATGCACATAAGCAGGAACCCCCCCAGTATTCCCACACCTCCCGGTTCCCATCTGCAATGGTGGTCACAGA
TACCAGTAGCATCAACACTCTCACCAGCATGTCTTCCAGTAAACAGTGTCCACTGCAAGCCTGGTGA

Translation (558 aa):
MVSKLTSLQQELLSALLSSGVTKEVLIQALEELLPSPNFGVKLETLPLSPGSGADLDTKPVFHTLTNGHA
KGRLSGDEGSEDGDDYDTPPILKELQALNTEEAAEQRAEVDRMLSEDPWRAAKMIKGYMQQHNIPQREVV
DVTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQREILRQFNQTVQSSGNMTDKSSQDQLLFLFPEFS
QQNQGPGQSEDTCSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSP
SKAHGLGSNLVTEVRVYNWFANRRKEEAFRQKLAMDAYSSNQTHNLNPLLTHGSPHHQPSSSPPNKMSGV
RYNQPGNNEVTSSSTISHHGNSAMVTSQSVLQQVSPASLDPGHSLLSPDSKMQITVSGGGLPPVSTLTNI
HSLSHHNPQQSQNLIMTPLSGVMAIAQSLNTSQAQGVPVINSVASSLAALQPVQFSQQLHSPHQQPLMQQ
SPGSHMAQQPFMAAVTQLQNSHMYAHKQEPPQYSHTSRFPSAMVVTDTSSINTLTSMSSSKQCPLQAW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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