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Report for CCDS25202.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25202.1 Public Mus musculus 11 Tubd1 23 108 98 CCDS HistoryNCBI Gene:56427Re-query CCDS DB by CCDS ID:25202.1Re-query CCDS DB by GeneID:56427See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25202.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069503.12 ENSMUSP00000064383.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069503.12Link to Ensembl Protein Viewer:ENSMUSP00000064383.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069503Re-query CCDS DB by Protein ID:ENSMUSP00000064383
Original member Current member EBI ENSMUST00000167178.8 ENSMUSP00000130909.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167178.8Link to Ensembl Protein Viewer:ENSMUSP00000130909.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000167178Re-query CCDS DB by Protein ID:ENSMUSP00000130909
Original member Current member NCBI NM_001199047.1 NP_001185976.1 Accepted alive Link to Nucleotide Sequence:NM_001199047.1Link to Protein Sequence:NP_001185976.1Re-query CCDS DB by Nucleotide ID:NM_001199047Re-query CCDS DB by Protein ID:NP_001185976Link to BLAST:NP_001185976.1
Original member Current member NCBI NM_019756.3 NP_062730.1 Accepted alive Link to Nucleotide Sequence:NM_019756.3Link to Protein Sequence:NP_062730.1Re-query CCDS DB by Nucleotide ID:NM_019756Re-query CCDS DB by Protein ID:NP_062730Link to BLAST:NP_062730.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185976.1 455 Q9R1K7 455 100% 0 0
NP_062730.1 455 Q9R1K7 455 100% 0 0

Chromosomal Locations for CCDS 25202.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 86548831 86549002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86549324 86549471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86552788 86553004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86555073 86555304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86557725 86557889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86561236 86561376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86565685 86565868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86567037 86567145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGTCGATAGTGACAGTACAGCTGGGGCAGTGTGGCAACCAGATTGGCTTTGAAGTGTTTGATGCTTTAT
TTAGAGACTCACACTGTTCCCAGGGACTCTGTTCTAAGAGGGACAACGAGGCATATCAAGCTTCCTGCAG
AGAAAGATTTTTCAGAGAGGAAGAAAATGGAGTTCCAGTTGCCCGGGCTGTTCTTGTTGACATGGAACCT
AAAGTTATCAATCAAACACTATCAAAAGCTGCCCAGTCTGGCCGATGGAATTATGGTCAGCACACGAGTT
TTTGTCAGAAACAAGGATCTGGGAACAACTGGGCATACGGTTACTCTGTGCATGGACCGAAGCATGAAGA
ATCTATAATGAACTTAATCCAAACAGAGGTGGAGAAATGTGACTCTTTGAGTGGATTTTTCATCATAATG
AGTATGGCCGGGGGAACAGGATCAGGGCTGGGAGCCTTCGTTACACAGAAGCTACAAGATCAGTACTCCA
GTTCCTTGAAAATGAACCAGATTATATGGCCTTATGGAACGGGTGAGGTCATTGTGCAGAACTACAACTC
CATCTTGACTCTCTCTCACCTGTACCGGTCTTCAGATGCCCTTCTCATTCACGAGAATGACGCTGTCCAT
AAGATCTGTGCCAAACGGATGAACATCAAGCAGATCTCCTTCAGAGACTTAAATCAAGTTCTTGCCCACC
AGCTGGGGAGTGTGTTCCAGCCTACATACTCTGAGGACAGCTCATTTCACTACCGCAGAAATCCACTAGG
AGACTTAATGGAGCATTTAGTTCCTCACCCTGAATTTAAGATGCTGGGTGTCCGTAACATTCCTCAGATG
TCTGCGGCGTCTCTGGCGTACAGCGCGTTTACCTGGGCTGGCCTCCTCAAGCACTTAAGACAGATGCTTA
TTTCCAGTGCAAAAATGGAAGAAGGTATCAACTGGCAGGTGCGGCCTCCTCTGACAGGCCTTCCACCCAT
TGGCAAAGCGTCTGCCCACAAGGAGCATCATTTTAACACTTCTCTTGCTAACTTGGTGGTCCTCCGAGGG
AGAGAGGTGCACAGTGCAGACGTAGAGGGATTTAAAGACCCAGCTCTCTACACTTCCTGGTTGGAGCCTG
TTGATGCTTTCAGTGTATGGAAAACCCAGCGAGCCTTTGACAAGTATGAGAAGTCTGCAGCCCTGGTCAG
CAACAGCCAGCTCTTAGTAAAGCCACTGGATATGATTGTGGGCAAGGCGTGGAATATGTTCTCATCCAAA
GCCTTTATCCATCAGTACACAAAATTTGGAATGGAGGAGGAAGACTTTTTGGACAGCTTTGCATTGTTGG
AGCAAGTTGTTGCCAGTTATGGTAGTCTTGGACCCTAA

Translation (455 aa):
MSIVTVQLGQCGNQIGFEVFDALFRDSHCSQGLCSKRDNEAYQASCRERFFREEENGVPVARAVLVDMEP
KVINQTLSKAAQSGRWNYGQHTSFCQKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIM
SMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPYGTGEVIVQNYNSILTLSHLYRSSDALLIHENDAVH
KICAKRMNIKQISFRDLNQVLAHQLGSVFQPTYSEDSSFHYRRNPLGDLMEHLVPHPEFKMLGVRNIPQM
SAASLAYSAFTWAGLLKHLRQMLISSAKMEEGINWQVRPPLTGLPPIGKASAHKEHHFNTSLANLVVLRG
REVHSADVEGFKDPALYTSWLEPVDAFSVWKTQRAFDKYEKSAALVSNSQLLVKPLDMIVGKAWNMFSSK
AFIHQYTKFGMEEEDFLDSFALLEQVVASYGSLGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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