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Report for CCDS25329.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25329.1 Public Mus musculus 11 Pip4k2b 23 108 98 CCDS HistoryNCBI Gene:108083Re-query CCDS DB by CCDS ID:25329.1Re-query CCDS DB by GeneID:108083See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25329.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018691.8 ENSMUSP00000018691.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018691.8Link to Ensembl Protein Viewer:ENSMUSP00000018691.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000018691Re-query CCDS DB by Protein ID:ENSMUSP00000018691
Original member Current member NCBI NM_054051.1 NP_473392.1 Accepted alive Link to Nucleotide Sequence:NM_054051.1Link to Protein Sequence:NP_473392.1Re-query CCDS DB by Nucleotide ID:NM_054051Re-query CCDS DB by Protein ID:NP_473392Link to BLAST:NP_473392.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473392.1 416 Q80XI4 416 100% 0 0

Chromosomal Locations for CCDS 25329.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97718859 97718939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97719730 97719833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97720223 97720481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97722362 97722475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97722940 97722978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97724379 97724525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97726705 97726857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97729554 97729650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97732658 97732755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97744446 97744604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGTCGTCCAACTGCACCAGCACCACGGCGGTGGCGGTGGCGCCGCTCAGCGCCAGCAAAACCAAGACCA
AGAAGAAGCATTTCGTGTGCCAGAAAGTGAAGCTATTCCGGGCCAGCGAGCCGATTCTCAGCGTCCTGAT
GTGGGGGGTGAACCACACGATCAATGAGCTGAGCAATGTCCCTGTTCCTGTCATGCTAATGCCGGATGAC
TTCAAAGCTTACAGCAAGATCAAGGTGGACAATCATCTCTTCAATAAGGAAAACCTCCCCAGCCGCTTCA
AGTTCAAGGAGTACTGCCCCATGGTGTTCCGAAACCTCAGGGAGAGGTTCGGCATCGATGACCAGGACTA
CCAGAATTCAGTGACACGCAGTGCACCTATCAACAGTGACAGCCAGGGCAGGTGTGGCACTCGCTTCCTC
ACCACCTATGACCGGCGTTTCGTCATCAAGACTGTGTCAAGTGAGGATGTGGCCGAGATGCACAACATCC
TAAAGAAATACCACCAGTTCATAGTGGAATGTCACGGCAATACCCTCTTGCCACAGTTCCTGGGCATGTA
CCGCCTGACCGTGGATGGGGTGGAAACCTACATGGTGGTCACCAGGAATGTATTCAGTCATCGGCTTACT
GTGCATCGCAAATACGACCTGAAGGGTTCCACTGTTGCCAGAGAAGCCAGTGACAAGGAAAAGGCTAAGG
ACTTGCCAACTTTCAAAGATAATGACTTCCTCAACGAAGGGCAGAAGCTGCACGTGGGAGAAGAGAGCAA
AAAGAACTTCCTGGAAAAACTGAAGCGGGACGTTGAGTTCCTGGCCCAGCTGAAGATCATGGATTACAGT
CTCCTGGTGGGCATCCACGACGTGGACCGGGCAGAGCAGGAGGAGATGGAGGTGGAAGAGCGAGCGGAGG
AGGAGGAATGCGAGAATGATGGGGTGGGTGGCAGCCTGCTCTGCTCCTATGGCACGCCTCCAGACAGCCC
TGGCAACCTCCTGAGCTTCCCCCGGTTCTTCGGCCCAGGAGAGTTCGACCCCTCTGTGGACGTCTATGCC
ATGAAAAGCCATGAAAGTGCCCCTAAGAAGGAGGTCTATTTCATGGCCATCATTGACATCCTCACACCCT
ATGACGCTAAGAAGAAAGCTGCACACGCCGCCAAAACGGTGAAACATGGGGCAGGGGCTGAGATCTCCAC
TGTGAACCCGGAGCAGTACTCAAAACGCTTCAACGAGTTCATGTCCAACATCCTGACGTAA

Translation (416 aa):
MSSNCTSTTAVAVAPLSASKTKTKKKHFVCQKVKLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDD
FKAYSKIKVDNHLFNKENLPSRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFL
TTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRNVFSHRLT
VHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYS
LLVGIHDVDRAEQEEMEVEERAEEEECENDGVGGSLLCSYGTPPDSPGNLLSFPRFFGPGEFDPSVDVYA
MKSHESAPKKEVYFMAIIDILTPYDAKKKAAHAAKTVKHGAGAEISTVNPEQYSKRFNEFMSNILT


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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