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Report for CCDS25418.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25418.1 Public Mus musculus 11 Gast 23 108 98 CCDS HistoryNCBI Gene:14459Re-query CCDS DB by CCDS ID:25418.1Re-query CCDS DB by GeneID:14459See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25418.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017309.1 ENSMUSP00000017309.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017309.1Link to Ensembl Protein Viewer:ENSMUSP00000017309.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000017309Re-query CCDS DB by Protein ID:ENSMUSP00000017309
Original member Current member NCBI NM_010257.4 NP_034387.3 Accepted alive Link to Nucleotide Sequence:NM_010257.4Link to Protein Sequence:NP_034387.3Re-query CCDS DB by Nucleotide ID:NM_010257Re-query CCDS DB by Protein ID:NP_034387Link to BLAST:NP_034387.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034387.3 101 P48757 101 100% 0 0

Chromosomal Locations for CCDS 25418.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100336483 100336693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100336805 100336899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (306 nt):
ATGCCTCGACTGTGTGTGTACATGCTGGTCTTAGTGCTGGCTCTAGCTACCTTCTCGGAAGCTTCTTGGA
AGCCCCGCTCCCAGCTACAGGATGCATCATCTGGACCAGGGACCAATGAGGACCTGGAACAGCGCCAGTT
CAACAAGCTGGGCTCAGCCTCTCACCATCGAAGGCAGCTGGGGCCCCAGGGTCCTCAACACTTCATAGCA
GACCTGTCCAAGAAGCAGAGGCCACGAATGGAGGAAGAAGAAGAGGCCTACGGATGGATGGACTTTGGCC
GCCGCAGTGCTGAGGAAGACCAGTAG

Translation (101 aa):
MPRLCVYMLVLVLALATFSEASWKPRSQLQDASSGPGTNEDLEQRQFNKLGSASHHRRQLGPQGPQHFIA
DLSKKQRPRMEEEEEAYGWMDFGRRSAEEDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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