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Report for CCDS25449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25449.1 Public Mus musculus 11 Retreg3 23 108 98 CCDS HistoryNCBI Gene:67998Re-query CCDS DB by CCDS ID:25449.1Re-query CCDS DB by GeneID:67998See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25449.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017946.5 ENSMUSP00000017946.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017946.5Link to Ensembl Protein Viewer:ENSMUSP00000017946.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000017946Re-query CCDS DB by Protein ID:ENSMUSP00000017946
Original member Current member NCBI NM_026501.3 NP_080777.1 Accepted alive Link to Nucleotide Sequence:NM_026501.3Link to Protein Sequence:NP_080777.1Re-query CCDS DB by Nucleotide ID:NM_026501Re-query CCDS DB by Protein ID:NP_080777Link to BLAST:NP_080777.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080777.1 466 Q9CQV4-1 466 100% 0 0

Chromosomal Locations for CCDS 25449.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101098163 101098620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101099008 101099140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101099673 101099755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101100922 101101059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101102006 101102090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101102883 101103009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101103890 101103920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101106307 101106413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101119541 101119779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGGAGGAGGCTGAAGGGGTGGCCGCGGCCCCGGGTCCAGCTTCGGGGTTGGCTTTCAGGGGCCGCCGAG
CTATGTCCGGCTCCTGGGAGCGCGACCAGCAGGTTGAGGCGGCGCAGCGGACCCTGGTGGAGGTGCTGGG
CCCTTACGAGCCTCTGCTGAGCCGGGTGCAGGCAGCCCTGGTGTGGGAGCGGCCGGCCAGGAGCGCCCTG
TGGTGCCTGGGGCTGAACGCGGCGTTCTGGTTTTTTGCATTGACATCACTTCGTTTTGTGTTTTTGCTTG
CATTCAGCTTGATGATCATTGTCTGTATTGACCAATGGAAGAACAAAATTTGGCCTGAGATAAACGTGCC
GAGACCTGACGCCTTGGACAACGAGAGCTGGGGCTTTGTGCACCCTCGGTTGCTCAGCGTGCCCGAGCTC
TGCCACCATGTAGCTGAAGTCTGGGTTAGTGGGACCATTTTCATAAGGAATCTTTTGCTTTTCAAAAAGC
AAAACCCAGGCAAGTTCTGCCTGCTGAGCTGTGGGGTACTGACCTTTTTGGCCATGTTGGGCCGCTACAT
CCCTGGGCTCCTGCTGTCCTACTTGATGCTTGTCATCATTATGATGTGGCCTCTTGCTGTCTATCACCGT
CTGTGGGATCGAGCCTATGTGCGACTGAAGCCAGTTCTGCAGCGGCTGGACTTCAGTGTCCGTGGCTACA
TGATGTCCAAGCAGAGAGAAAGACAATTGCGCCGCAGAGCTCTGCACTCAGAACGTGCCACGGACAGCCA
CAGTGACAGTGAAGAGGAACTTGCTGCCTTCTGTCCTCAGCTGGATGATTCTACTGTTGCCAGGGAATTG
GCTATCACAGATTCGGAGCACTCTGATGCTGAGGTCTCCTGTACAGAAAATGGCACATTTAACCTGTCAA
GAGGCCAAACACCTCTAACAGAAGGCTCTGAAGACCTAGATGGCCACAGTGATCCAGAGGAGTCATTTGC
CAGAGACCTGCCAGACTTCCCTTCCATTAACGTGGATCCTGCTGGCCTGGACGACGAGGACGACACCAGC
ATTGGGATGCCCAGCTTGATGTACCGCTCCCCACCAGGGGCTGGGGATACCCAGGTCCTGCCTGCTAGTC
GGAATGAGGCTGCACTGCCAGAGCTCCTGCTTAGTTCCCTTCCTGGAGGATCTAACCTTACCAGCAACCT
TGCCAGCCTGGTCTCCCAGGGTATGATCCAACTGGCCTTGTCAGAGGCCTCCCAGACAGACCCTTCTGGC
CCACCTCCCCGAAGAGCAACAAGAGGCTTCCTCCGGGCCCCTAGTTCAGACCTGGACACTGATGCTGAAG
GAGATGATTTTGAACTTCTGGACCAATCAGAGCTGAATCAGCTAGACCCTGCCAGTTCTAGGAGCCACTG
A

Translation (466 aa):
MEEAEGVAAAPGPASGLAFRGRRAMSGSWERDQQVEAAQRTLVEVLGPYEPLLSRVQAALVWERPARSAL
WCLGLNAAFWFFALTSLRFVFLLAFSLMIIVCIDQWKNKIWPEINVPRPDALDNESWGFVHPRLLSVPEL
CHHVAEVWVSGTIFIRNLLLFKKQNPGKFCLLSCGVLTFLAMLGRYIPGLLLSYLMLVIIMMWPLAVYHR
LWDRAYVRLKPVLQRLDFSVRGYMMSKQRERQLRRRALHSERATDSHSDSEEELAAFCPQLDDSTVAREL
AITDSEHSDAEVSCTENGTFNLSRGQTPLTEGSEDLDGHSDPEESFARDLPDFPSINVDPAGLDDEDDTS
IGMPSLMYRSPPGAGDTQVLPASRNEAALPELLLSSLPGGSNLTSNLASLVSQGMIQLALSEASQTDPSG
PPPRRATRGFLRAPSSDLDTDAEGDDFELLDQSELNQLDPASSRSH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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