NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25450.1 Public Mus musculus 11 Retreg3 23 108 98 CCDS HistoryNCBI Gene:67998Re-query CCDS DB by CCDS ID:25450.1Re-query CCDS DB by GeneID:67998See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25450.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107295.9 ENSMUSP00000102916.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107295.9Link to Ensembl Protein Viewer:ENSMUSP00000102916.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107295Re-query CCDS DB by Protein ID:ENSMUSP00000102916
Original member Current member NCBI NM_028933.4 NP_083209.1 Accepted alive Link to Nucleotide Sequence:NM_028933.4Link to Protein Sequence:NP_083209.1Re-query CCDS DB by Nucleotide ID:NM_028933Re-query CCDS DB by Protein ID:NP_083209Link to BLAST:NP_083209.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083209.1 285 Q9CQV4-2 285 100% 0 0

Chromosomal Locations for CCDS 25450.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101098163 101098620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101099008 101099140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101099673 101099755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101100922 101101059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101102006 101102051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGTTGGGCCGCTACATCCCTGGGCTCCTGCTGTCCTACTTGATGCTTGTCATCATTATGATGTGGCCTC
TTGCTGTCTATCACCGTCTGTGGGATCGAGCCTATGTGCGACTGAAGCCAGTTCTGCAGCGGCTGGACTT
CAGTGTCCGTGGCTACATGATGTCCAAGCAGAGAGAAAGACAATTGCGCCGCAGAGCTCTGCACTCAGAA
CGTGCCACGGACAGCCACAGTGACAGTGAAGAGGAACTTGCTGCCTTCTGTCCTCAGCTGGATGATTCTA
CTGTTGCCAGGGAATTGGCTATCACAGATTCGGAGCACTCTGATGCTGAGGTCTCCTGTACAGAAAATGG
CACATTTAACCTGTCAAGAGGCCAAACACCTCTAACAGAAGGCTCTGAAGACCTAGATGGCCACAGTGAT
CCAGAGGAGTCATTTGCCAGAGACCTGCCAGACTTCCCTTCCATTAACGTGGATCCTGCTGGCCTGGACG
ACGAGGACGACACCAGCATTGGGATGCCCAGCTTGATGTACCGCTCCCCACCAGGGGCTGGGGATACCCA
GGTCCTGCCTGCTAGTCGGAATGAGGCTGCACTGCCAGAGCTCCTGCTTAGTTCCCTTCCTGGAGGATCT
AACCTTACCAGCAACCTTGCCAGCCTGGTCTCCCAGGGTATGATCCAACTGGCCTTGTCAGAGGCCTCCC
AGACAGACCCTTCTGGCCCACCTCCCCGAAGAGCAACAAGAGGCTTCCTCCGGGCCCCTAGTTCAGACCT
GGACACTGATGCTGAAGGAGATGATTTTGAACTTCTGGACCAATCAGAGCTGAATCAGCTAGACCCTGCC
AGTTCTAGGAGCCACTGA

Translation (285 aa):
MLGRYIPGLLLSYLMLVIIMMWPLAVYHRLWDRAYVRLKPVLQRLDFSVRGYMMSKQRERQLRRRALHSE
RATDSHSDSEEELAAFCPQLDDSTVARELAITDSEHSDAEVSCTENGTFNLSRGQTPLTEGSEDLDGHSD
PEESFARDLPDFPSINVDPAGLDDEDDTSIGMPSLMYRSPPGAGDTQVLPASRNEAALPELLLSSLPGGS
NLTSNLASLVSQGMIQLALSEASQTDPSGPPPRRATRGFLRAPSSDLDTDAEGDDFELLDQSELNQLDPA
SSRSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH