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Report for CCDS25540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25540.1 Public Mus musculus 11 Marchf10 23 108 98 CCDS HistoryNCBI Gene:632687Re-query CCDS DB by CCDS ID:25540.1Re-query CCDS DB by GeneID:632687See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25540.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100332.3 ENSMUSP00000097906.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100332.3Link to Ensembl Protein Viewer:ENSMUSP00000097906.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100332Re-query CCDS DB by Protein ID:ENSMUSP00000097906
Original member NCBI NM_001039242.2 NP_001034331.1 Updated not alive Link to Nucleotide Sequence:NM_001039242.2Link to Protein Sequence:NP_001034331.1Re-query CCDS DB by Nucleotide ID:NM_001039242Re-query CCDS DB by Protein ID:NP_001034331
Current member NCBI NM_001039242.3 NP_001034331.1 Accepted alive Link to Nucleotide Sequence:NM_001039242.3Link to Protein Sequence:NP_001034331.1Re-query CCDS DB by Nucleotide ID:NM_001039242Re-query CCDS DB by Protein ID:NP_001034331Link to BLAST:NP_001034331.1

Chromosomal Locations for CCDS 25540.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 105401866 105402200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105408643 105408814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105438819 105438935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105451076 105451165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGTTGCATGAAACAAGGGACAGGCAGAAGTTCGTCAGCGATGTTCAGTATCTACGGGATATGCAGCATA
AGGTGGACTCAGAATATCAGGCTTGTTTGAAACGACAGGAAAACAAGAAAGAACCAAATGAGAAGAAGCA
GGAGCAGCTGTGGGTGAGAGATACAAGTGACAGGTCGCGGTTTTCAAGCGGGTCGTCATGCAAACAGAGT
TCCTGTGAGGAGGATTCTCGCAGTGAAGCAAGATTATCTACCAAAACATCTTCGGCTAAGTGTGAGCCCA
GACTTCCAGCCATTGACCAAGCATCTGTCAAGCAGAAACACAAAGGCACCATGACACTAAAGAAGTCAGA
GAAAGTGAGCCCCAGCAAACCCTCTCCAGGTGACAGCAGCGAGCAGCCCCTGTTCTGTGTTGAATATTCC
CCTTACTGCTCCGTCTTTGCTTTCTCCCCAACCCAGCAGCCCAATACCAATTACTGCTGCCTCCTTCTGC
CCTTAGTTCCACCAGCTGCCCAGGGGGCCCAGAGCCCTTCCACTTCCCTCCCTCCCGCCATCTTTCCCAC
CTTCTCCACCCCGCCCTCAAGCCCCCTGAGCCCCTTGCTGGGGTCTCCAGCATCTCTCTGCTACTTCCCT
GTCTCCCAACCGACTCCAGCCGAGACCCCTGTGCTGTGTCTACCAGGCCCCAGAAGGCCCAGTAAAATTT
ACCTCATATGGTAA

Translation (237 aa):
MLHETRDRQKFVSDVQYLRDMQHKVDSEYQACLKRQENKKEPNEKKQEQLWVRDTSDRSRFSSGSSCKQS
SCEEDSRSEARLSTKTSSAKCEPRLPAIDQASVKQKHKGTMTLKKSEKVSPSKPSPGDSSEQPLFCVEYS
PYCSVFAFSPTQQPNTNYCCLLLPLVPPAAQGAQSPSTSLPPAIFPTFSTPPSSPLSPLLGSPASLCYFP
VSQPTPAETPVLCLPGPRRPSKIYLIW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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