NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25602.1 Public Mus musculus 11 Cpsf4l 23 108 98 CCDS HistoryNCBI Gene:52670Re-query CCDS DB by CCDS ID:25602.1Re-query CCDS DB by GeneID:52670See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25602.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018871.7 ENSMUSP00000018871.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018871.7Link to Ensembl Protein Viewer:ENSMUSP00000018871.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000018871Re-query CCDS DB by Protein ID:ENSMUSP00000018871
Original member Current member NCBI NM_029794.2 NP_084070.1 Accepted alive Link to Nucleotide Sequence:NM_029794.2Link to Protein Sequence:NP_084070.1Re-query CCDS DB by Nucleotide ID:NM_029794Re-query CCDS DB by Protein ID:NP_084070Link to BLAST:NP_084070.1

Chromosomal Locations for CCDS 25602.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 113698585 113698666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113699836 113699982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113702413 113702509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113703271 113703366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113706417 113706567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGCTATGCCCACTCCGGCACGAGCAGGGTGAGAAGCTGGTGGTGTGCAAACACTGGCTTCGAGGCCTCT
GCCGGAAGAGTGATTGCTGCGACTTCCTGCACCAGTATGACGTCAGCAAGATGCCCGTGTGCTATTTCCA
CTCCAAGTTCGGGAACTGCAGCAACAAGGAATGCCTGTTCCTGCACTTGAAGCCAGTTCTCAAGCTCCAG
GACTGCCCGTGGTATAACCAAGGGTTCTGCAAGGAAGTAGGTCCCCTGTGTAAATACCGCCATGTTCATC
AAGTACTGTGTCCCAACTACTTCACCGGCTTCTGCCCCGAGGGACCTCAGTGCCAATTTGGGCACTGCAG
CCTGTCAACCAGCCATGGGATTCAACAACTTCTACTGGCAACACTCTGGTGTCCCCTTTCCAGGCAAAGC
CCATGGTCCACGGTCAGAGGAGGTGGAGTCTGCCTCAGGCCTGCAGCTCAAGGGCACACCCTGCACCTTA
GGCCACCATGCCAGCAAAGTAAGCTGTACCCGTTGGAGCCATCAAAACCTAGTCTGAAGCGAGGGAGTTG
GACGTTCTCCTAG

Translation (190 aa):
MLCPLRHEQGEKLVVCKHWLRGLCRKSDCCDFLHQYDVSKMPVCYFHSKFGNCSNKECLFLHLKPVLKLQ
DCPWYNQGFCKEVGPLCKYRHVHQVLCPNYFTGFCPEGPQCQFGHCSLSTSHGIQQLLLATLWCPLSRQS
PWSTVRGGGVCLRPAAQGHTLHLRPPCQQSKLYPLEPSKPSLKRGSWTFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH