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Report for CCDS25640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25640.1 Public Mus musculus 11 Nup85 23 108 98 CCDS HistoryNCBI Gene:445007Re-query CCDS DB by CCDS ID:25640.1Re-query CCDS DB by GeneID:445007See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25640.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021085.10 ENSMUSP00000021085.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021085.10Link to Ensembl Protein Viewer:ENSMUSP00000021085.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021085Re-query CCDS DB by Protein ID:ENSMUSP00000021085
Original member Current member NCBI NM_001002929.4 NP_001002929.3 Accepted alive Link to Nucleotide Sequence:NM_001002929.4Link to Protein Sequence:NP_001002929.3Re-query CCDS DB by Nucleotide ID:NM_001002929Re-query CCDS DB by Protein ID:NP_001002929Link to BLAST:NP_001002929.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002929.3 656 Q8R480 656 100% 0 0

Chromosomal Locations for CCDS 25640.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115564530 115564562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115565154 115565247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115566601 115566763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115568363 115568433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115568679 115568722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115569702 115569771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115569999 115570120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115577930 115578064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115578164 115578286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115578489 115578620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115578790 115578896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115580504 115580587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115580730 115580795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115580921 115581072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115581742 115581859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115581939 115582039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115582877 115583028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115583326 115583427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115583721 115583822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1971 nt):
ATGGAGGAGCTCGACTGCGAGCCCGCAGTAACTTGGATTCCAGGTGTGAATTCCAAGAAGAAGCAAATGT
GTTTTGACTGGGGCCCCGGCGAGATGCTTCTGTGTGAAACTTCCTTCAACCAAACAGGCAAATCAGAGAA
GGTGCCGAGCTGCCCTTTTATCTACATCATACGGAAAGATGTGGATGTTTACTCTCAAATTTTGAGAAAA
CTCTTCAATGAATCCCATGGAATCTTTGTTGGCCTGCAAAAAATTGAGGAAGAACTGTCGGGGAAGTCCA
GGAAAGCTCAATTGGTTCGAGTGAGTAAAAATTACCGTTCAGTCATACGGGCCTGTATGGAAGAAATGCA
TCAGGTTGCAATTGCTGCTAAAGATCCAGCCAGTGGCCGGCAGTTCAGCAGCCAGGTCTCCATTTTGTCA
GCCATGGAGCTCATTTGGAACCTGTGTGAGATTCTCTTTATTGAAGTAGCACCAGCTGGCCCTCTCCTCC
TTCACCTTCTTGACTGGGTCCGACTGCACGTGTGCGAGGTGGACAGTTTGTCGGCAGATGTCCTGGGCGG
TGACAACCCAAGCAAGCATGAAAACTTCTGGGACCTGGTGACTGTTCTGGTGCTTCAGGGCCGGCTCGAT
GAGGCACGGCAGATGCTAGCCAAAGAAGCTGATGCCAACCCCTCTTGTGCAGGCATGTGCCGCGTCCTTG
GGGACCTGATGAGGACAATGCCCATTCTCAGCCCTGGCAATACTCAGACACTGACAGAGTTGGAGCTGAA
GTGGCAGCACTGGCGTGAGGAGTGTGAAAGACACTTACAAGACAACACATTTGCAGCCAACCCCCGTCTG
GAGTCTCTCTGCAAGATCATGCTGGGAGATGAGGCCGCCTTGTTGGAGCAGAAGGAGCTTCTGAGCAACT
GGTACCATTTCTTAGTGACGAGGCTGCTGTACTCTAACCCCACAGTGAAGCCCATTGACCTGCACTTCTA
TGCCCAGTCCAGCCTAGACATGTTTCTTGGAGGTGAGAGCAGTCCAGAACCACTGGACAACATCTTGATG
GCGGCCTTTGAGTTCGACATTCACCAGGTGATCAAAGAGTGCAGCATCGCCCTGAGCAACTGGTGGTTCG
TAGCTCACCTCACAGACCTTTTGGATCACTGCAGACTCCTCCAGTCACACAATCTCTATTTTGGTTCTAA
CATGAGAGAATTCCTCCTGCTGGAGTACGCCTCAGGACTGTTTGCTCACCACAGCCTGTGGCAGCTGGGG
GTGGACTACTTTGATTACTGCCCGGAGCTAGGCCGAGTTTCCTTGGAGCTGCACATTGAGCGGATTCCTC
TCAACACAGAGCAGAAAGCCTTGAAGGTGCTGAGGATTTGTGAGCAGCGGCAGATGACTGAGCAAGTTAA
AAGCATCTGTAAGATCTTGGCCATGAAGGCTGTTCGTAATAACCGCTTGGGCTCAGCACTCTCCTGGAGC
ATCCGTGCCAAAGATGCTGCCTTTGCCACACTCGTATCTGACAGATTCCTCCGGGATTACTGTGAGAGAG
GCTGCTTTTCTGACTTGGATCTCATTGACAATCTGGGGTCAGCCATGATGCTCAGTGATCGACTGACGTT
TCTGGGAAAGTACCGGGAGTTCCACAGACTGTACGGGGAGAAGCGCTTTGGTGACGCTGCTTCTCTTCTG
CTGTCCCTCATGACCTCTCAGATTGCACCTCGTTCTTTCTGGATGACTCTGCTCACAGATGCCCTTCCTC
TTTTGGAACAGAAACAGGTGATTTTTTCAGCAGAGCAGACATATGAGCTGATGCGGTGCCTGGAAGACTT
GGCCTCAGGGAGGCCAGAGTGTGGTGAACCTGATGCCCAGCGACTGCAGGATGACGACATAGAGACCACC
AAGGTGGAGATGCTGAGACTGGCTCTTGCCCGGAATCTTGCTCGGGCAATTATAAGGGAAGGCTCACTGG
AGGGTTCCTGA

Translation (656 aa):
MEELDCEPAVTWIPGVNSKKKQMCFDWGPGEMLLCETSFNQTGKSEKVPSCPFIYIIRKDVDVYSQILRK
LFNESHGIFVGLQKIEEELSGKSRKAQLVRVSKNYRSVIRACMEEMHQVAIAAKDPASGRQFSSQVSILS
AMELIWNLCEILFIEVAPAGPLLLHLLDWVRLHVCEVDSLSADVLGGDNPSKHENFWDLVTVLVLQGRLD
EARQMLAKEADANPSCAGMCRVLGDLMRTMPILSPGNTQTLTELELKWQHWREECERHLQDNTFAANPRL
ESLCKIMLGDEAALLEQKELLSNWYHFLVTRLLYSNPTVKPIDLHFYAQSSLDMFLGGESSPEPLDNILM
AAFEFDIHQVIKECSIALSNWWFVAHLTDLLDHCRLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLG
VDYFDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVKSICKILAMKAVRNNRLGSALSWS
IRAKDAAFATLVSDRFLRDYCERGCFSDLDLIDNLGSAMMLSDRLTFLGKYREFHRLYGEKRFGDAASLL
LSLMTSQIAPRSFWMTLLTDALPLLEQKQVIFSAEQTYELMRCLEDLASGRPECGEPDAQRLQDDDIETT
KVEMLRLALARNLARAIIREGSLEGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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