NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25654.1 Public Mus musculus 11 Galk1 23 108 98 CCDS HistoryNCBI Gene:14635Re-query CCDS DB by CCDS ID:25654.1Re-query CCDS DB by GeneID:14635See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25654.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021114.4 ENSMUSP00000021114.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021114.4Link to Ensembl Protein Viewer:ENSMUSP00000021114.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021114Re-query CCDS DB by Protein ID:ENSMUSP00000021114
Original member Current member NCBI NM_016905.2 NP_058601.2 Accepted alive Link to Nucleotide Sequence:NM_016905.2Link to Protein Sequence:NP_058601.2Re-query CCDS DB by Nucleotide ID:NM_016905Re-query CCDS DB by Protein ID:NP_058601Link to BLAST:NP_058601.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058601.2 392 Q9R0N0 392 100% 0 0

Chromosomal Locations for CCDS 25654.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116008643 116008714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116008803 116008965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116009048 116009198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116009921 116010102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116010241 116010376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116010563 116010682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116011027 116011216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116012514 116012678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGGCTGCTTGGAGACCGCCCCGGGTCGAGGAGCTGCTGGCCGAGGCCCGCCGGGCCTTCATGGAGGAGT
TTGGAGCCGAGCCGGAGCTGGCAGTGTCGGCGCCGGGCCGCGTCAACCTCATCGGGGAGCACACGGACTA
CAACCAGGGCCTGGTGCTGCCCATGGCACTGGAGCTCGTGACCGTGATGGTTGGCAGCCCCCGGACAGAT
GGGCTTGTTTCTCTTCTCACCACTTCCAAAGATGCAGACGAGCCCCAAAGACTGCAGTTCCCACTGCCCT
CAGCCCAGTGGTCCTTGGAGCCTGGAATCCCACAGTGGGCCAATTATGTCAAGGGAGTGATTCAACATTA
CCCAGCTTCCCCGCTCGTTGGCTTCAGTGCAGTGGTGGTCAGCTCAGTGCCCCTGGGGGGTGGGCTTTCC
AGCTCAGCGTCTCTGGAAGTGGCCACGTACACCTTCATCCAGCAGCTCTGCCCAGACTCGGGGGCAATAG
CTGCCCGGGCCCAGGTGTGTCAACGGGCTGAGCACAGCTTCGCAGGGGTGCCCTGTGGCATCATGGACCA
ACTCATCGCGCTGCTGGGGCAGAAAGGCTATGCACTACTCATTGACTGCAGGTCCCTGGAAACAAGCCTG
GTGCCACTGTCAGACCCCAAGCTGGCCGTGCTCATCACCAACTCCAATGTCCGCCATTCCCTGGGCTCCA
GCGAGTACCCGGTTCGTCGGCGACAGTGTGAAGAAGTGGCCCAGGCCCTGGGCAAGGAGAGCCTTCGAGA
GGTGCGGATGGAGGAGCTTGAGGCGGGCAGGGAGCTAATGAGCAAGGAGGGCTTCCGGCGGGCCCGGCAT
GTGGTAAGCGAGATCCGGAGAACAGCCCAGGCAGCAGCTGCTATGAGCCGAGGAGACTACAAGGCCTTTG
GGCGTCTCATGGTGGAGAGTCACTACTCACTCAGGGATGACTATGAGGTCAGCTGCCCTGAGCTGGATCA
ATTGGTTGAGGCCGCGCTCTCTGTGCCTGGGGTTTATGGCAGTCGCATGACAGGTGGTGGCTTTGGTGGC
TGCACCGTCACATTGCTGGAGGCCTCTGTTGCCCCTCTTGTCATAGATCATATACAGGAGCAGTACAGTG
GGACAGCCACCTTCTACCTCTCTCAAGCTGCCGATGGAGCCCAGGTGCTGAGCTTGTGA

Translation (392 aa):
MAAWRPPRVEELLAEARRAFMEEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELVTVMVGSPRTD
GLVSLLTTSKDADEPQRLQFPLPSAQWSLEPGIPQWANYVKGVIQHYPASPLVGFSAVVVSSVPLGGGLS
SSASLEVATYTFIQQLCPDSGAIAARAQVCQRAEHSFAGVPCGIMDQLIALLGQKGYALLIDCRSLETSL
VPLSDPKLAVLITNSNVRHSLGSSEYPVRRRQCEEVAQALGKESLREVRMEELEAGRELMSKEGFRRARH
VVSEIRRTAQAAAAMSRGDYKAFGRLMVESHYSLRDDYEVSCPELDQLVEAALSVPGVYGSRMTGGGFGG
CTVTLLEASVAPLVIDHIQEQYSGTATFYLSQAADGAQVLSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH