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Report for CCDS25773.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25773.1 Public Mus musculus 11 Wdr45b 23 108 98 CCDS HistoryNCBI Gene:66840Re-query CCDS DB by CCDS ID:25773.1Re-query CCDS DB by GeneID:66840See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25773.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026173.12 ENSMUSP00000026173.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026173.12Link to Ensembl Protein Viewer:ENSMUSP00000026173.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000026173Re-query CCDS DB by Protein ID:ENSMUSP00000026173
Original member Current member NCBI NM_025793.3 NP_080069.2 Accepted alive Link to Nucleotide Sequence:NM_025793.3Link to Protein Sequence:NP_080069.2Re-query CCDS DB by Nucleotide ID:NM_025793Re-query CCDS DB by Protein ID:NP_080069Link to BLAST:NP_080069.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080069.2 344 Q9CR39 344 100% 0 0

Chromosomal Locations for CCDS 25773.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 121328358 121328464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121328793 121328914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121329326 121329427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121330147 121330232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121335384 121335574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121336976 121337070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121338557 121338644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121341114 121341215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121349232 121349306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121354227 121354293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGAACCTCCTGCCGTGTAACCCTCACGGCAACGGGCTGCTGTACGCCGGCTTCAACCAGGACCACGGGT
GTTTTGCATGTGGAATGGAAAATGGATTCCGAGTCTATAATACCGATCCACTCAAAGAAAAAGAGAAACA
AGAATTTTTAGAAGGAGGAGTTGGCCATGTGGAAATGTTATTTCGCTGTAACTATTTAGCTTTAGTTGGT
GGTGGAAAAAAACCGAAATACCCTCCCAACAAAGTGATGATCTGGGATGATCTGAAGAAGAAGACAGTCA
TCGAGATAGAATTCTCCACAGAGGTCAAGGCTGTCAAGTTGCGGAGAGATAGAATTGTGGTGGTTCTGGA
CTCCATGATTAAGGTGTTCACGTTCACACACAATCCCCACCAGTTGCACGTCTTTGAAACCTGCTACAAC
CCTAAAGGCCTCTGTGTCCTGTGTCCCAACAGTAACAACTCCCTTCTTGCCTTCCCTGGCACTCACACTG
GCCACGTACAGCTTGTGGACCTGGCCAGCACTGAAAAGCCACCCGTGGACATTCCCGCACATGAGGGTGT
CCTGAGCTGTATTGCTCTCAACCTGCAGGGAACAAGAATTGCAACTGCATCTGAAAAAGGGACCCTTATA
AGAATATTTGATACTTCATCAGGGCATTTAATCCAGGAGCTACGAAGAGGATCTCAAGCAGCCAATATCT
ATTGCATCAACTTCAATCAGGACGCTTCTCTCATCTGTGTGTCCAGTGATCATGGCACTGTGCACATTTT
TGCAGCCGAAGATCCAAAAAGGAATAAACAGTCTAGTTTGGCATCAGCCAGTTTCCTTCCAAAATACTTC
AGCTCCAAGTGGAGTTTTTCCAAGTTTCAGGTTCCTTCAGGCTCACCATGCATCTGTGCCTTTGGAACAG
AGCCCAATGCAGTCATTGCTATCTGTGCAGATGGCAGCTACTACAAGTTCCTGTTCAGTCCGAAGGGCGA
GTGTGTCCGGGACGTGTGTGCACAGTTCCTGGAGATGACCGATGACAAGCTGTGA

Translation (344 aa):
MNLLPCNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVG
GGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYN
PKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIALNLQGTRIATASEKGTLI
RIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDHGTVHIFAAEDPKRNKQSSLASASFLPKYF
SSKWSFSKFQVPSGSPCICAFGTEPNAVIAICADGSYYKFLFSPKGECVRDVCAQFLEMTDDKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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