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Report for CCDS25894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25894.1 Public Mus musculus 12 Zfp277 23 108 98 CCDS HistoryNCBI Gene:246196Re-query CCDS DB by CCDS ID:25894.1Re-query CCDS DB by GeneID:246196See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25894.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069637.14 ENSMUSP00000068032.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069637.14Link to Ensembl Protein Viewer:ENSMUSP00000068032.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000069637Re-query CCDS DB by Protein ID:ENSMUSP00000068032
Original member Current member NCBI NM_178845.3 NP_849173.2 Accepted alive Link to Nucleotide Sequence:NM_178845.3Link to Protein Sequence:NP_849173.2Re-query CCDS DB by Nucleotide ID:NM_178845Re-query CCDS DB by Protein ID:NP_849173Link to BLAST:NP_849173.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849173.2 457 E9Q6D6-2 457 100% 0 0

Chromosomal Locations for CCDS 25894.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 40315717 40315903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40317091 40317265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40318535 40318577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40320602 40320698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40322530 40322597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40328675 40328807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40329485 40329595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40335284 40335375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40363134 40363216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40364082 40364170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40378673 40378874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40445666 40445759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGGCTGCTAGTGAGGTCCAGGGGCTTCCTGTGGACCCCCGGGAGGCTGGGGTCCGCGGGGTCCGCGGCG
GAATCGGACACACAGATCATGAAGACAGTAAAGACTGTATCCTGGAGCCGCTTTCCCTGCCAGAGAGTCC
AGGTGGCACCACCGCTTTAGAAGGGTCTCCATCTGTGCCTTGTATTTTCTGTGAAGAACATTTTCCCATG
GCTGAACAAGACAAACTTTTGAAGCACATGATTATCGAGCATAAGATTGTCATAGCTGATGTGAAGCTCG
TTGCAGATTTCCGAAGGTACATTTTATACTGGAGGAAAAGGTTCACTGAACAGCCCATCACTGATTTTTG
CAGCGTGATAAGAATCAATTCCACAGCTCCATTTGAGGAACAAGACAACTATTATTTGTTATGTGATGCA
TTACCAGAAGATAGAATCCTCAGAGAAGAGCTTCAAAAACACAAACTGAAAGAAGTTCTGGATCAGCAAC
AGCGAGAGCGAAATGATACAAGCTTTCATGGTGTGTGCATGTTTTGCAGTGAGGAATTTCGCGGAAACAG
ATCTGTACTGTTGAACCACATGGCCAGAGAACATGCTTTCAACATTGGTTTGCCAGACAACATTGTAAAT
TGCGCTGAATTCCTATGCACATTGCAAAAGAAACTGGACAATTTACAGTGTTTGTACTGTGAGAAGACCT
TCAGAGACAAAAACACCCTTAAAGATCACATGAGAAAAAAGCAGCATCGTAGGATCAATCCAAAAAACAG
AGAATATGACCGATTCTATGTCATCAATTACTTGGAACTCGGGAAGTCATGGGAAGAGGTGCAGTCAGAA
GACGACCGCGAGCTGCTGGACCTTCAGGAAGACGACTGGTCTGATTGGCAGGAGTACCCAGTCTCTGCTG
TGTGTCTCTTTTGTGAAAAGCAAGAGGAGACAATAGATAAACTCTATGTGCACATGAAGGACACACATGA
GTTTGATCTCCTCAGAATAAAGTCAGAGCTTGGATTAAATTTCTATCAGCAAGTGAAGCTGGTCAATTTC
ATTAGAAGGCAAGTTCACCAATGCAAGTGCTACAGTTGCCATGTAAAGTTCAAATCCAAAGCAGATTTAA
GGACTCACATGGAAGACACTAAACACACCTCACTGCTTCCTGACAGGAAGACATGGGATCAACTGGAGTA
TTATTTCCCCACCTATGAGAATGACACTCTCCTGTGTACACTGTCTGACAGTGAAAGTGACCTAACAGCT
CAAGAGCAAACGGAAAATGTCCCCGTCATCAGTGAAGATACGTCCAGACTGTGTGCTTTAAAACAGAGCA
GTGTTCTCAACCAATTGCTACTCCAGGGGTGCCTGGAAAACTAG

Translation (457 aa):
MAASEVQGLPVDPREAGVRGVRGGIGHTDHEDSKDCILEPLSLPESPGGTTALEGSPSVPCIFCEEHFPM
AEQDKLLKHMIIEHKIVIADVKLVADFRRYILYWRKRFTEQPITDFCSVIRINSTAPFEEQDNYYLLCDA
LPEDRILREELQKHKLKEVLDQQQRERNDTSFHGVCMFCSEEFRGNRSVLLNHMAREHAFNIGLPDNIVN
CAEFLCTLQKKLDNLQCLYCEKTFRDKNTLKDHMRKKQHRRINPKNREYDRFYVINYLELGKSWEEVQSE
DDRELLDLQEDDWSDWQEYPVSAVCLFCEKQEETIDKLYVHMKDTHEFDLLRIKSELGLNFYQQVKLVNF
IRRQVHQCKCYSCHVKFKSKADLRTHMEDTKHTSLLPDRKTWDQLEYYFPTYENDTLLCTLSDSESDLTA
QEQTENVPVISEDTSRLCALKQSSVLNQLLLQGCLEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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