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Report for CCDS25920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25920.1 Public Mus musculus 12 Mbip 23 108 98 CCDS HistoryNCBI Gene:217588Re-query CCDS DB by CCDS ID:25920.1Re-query CCDS DB by GeneID:217588See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25920.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021416.8 ENSMUSP00000021416.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021416.8Link to Ensembl Protein Viewer:ENSMUSP00000021416.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021416Re-query CCDS DB by Protein ID:ENSMUSP00000021416
Original member Current member NCBI NM_145442.2 NP_663417.1 Accepted alive Link to Nucleotide Sequence:NM_145442.2Link to Protein Sequence:NP_663417.1Re-query CCDS DB by Nucleotide ID:NM_145442Re-query CCDS DB by Protein ID:NP_663417Link to BLAST:NP_663417.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663417.1 341 Q99LQ1 341 100% 0 0

Chromosomal Locations for CCDS 25920.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 56328695 56328799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56330229 56330267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56335798 56335895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56337303 56337455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56337764 56337829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56340201 56340297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56340385 56340603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56342236 56342355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56345672 56345800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGGCTGCTGCTGCGGAGCTTAGTTCCTCAAGCGGCAGCGAGAGGAGCCTGGAGCAATGCTCCAGCCCCC
TCCTCACCCGCGAGGTCCTCTGCGAAGTCTTTCGCTCCTTGCACACCCTGACAAGACAGCTTAACCTCAG
AGATGATGTGGTGAAAATTACAATCGATTGGAACAGGCTCCAGAGCCTCTCAGCATCCCAGCCTGCACTG
CTCCTTACTGCACTTGAACAACACGTTTTGTATTTACAGCCTTTTTTAGCAAAACTTCAGTCTTTAATGA
AAGAAAACTCAACAGCTACAGAGATAAGACAGACAGAAGCAGAGACCAAGAGTGAACTAAGAGCCATACA
TCCCACCGAGGACCTACAAGATGAAGGGAAGCCCAAAGACTGTGATGTAGGAGATGTGAAAAAGACACAA
AACCTTTTTGACCCAGAAGTAGTTCAGATCAAGGCTGGAAAAGCAGAAATTGACAGACGAATATCTGCAT
TTATTGAGAGAAAACAAGCTGAAATCAATGAAAACAATGTCAGGGAATTTTGCAATGTTATTGATTGTAA
TCAAGAAAATAGTTGTGCAAGAACTGATGCTGTCTTTACTCCTTATCCTGGATTTAAAAGTCATGTAAAG
GTTTCTAGAGTTGTGAATACATATGGACCACAGACTAGACCTGAAGGAATTGCAGGGTCAGGTCACAAAC
CTACAGGCATGCTTCGAGATTGTGGTAATCAGGCGGTAGAAGAACGACTCCAGAATATTGAGGCTCACCT
GCGATTGCAGACAGGTGGCCCAGTACCAAGAGACATCTACCAAAGAATTAAAAAGCTTGAAGATAAAATC
CTTGAATTGGAGGGCATCTCTCCTGAATACTTCCAATCTGTAAACTTCTCTGGAAAAAGAAGAAAAGTCC
AACCACCTCAACAGAACTATTCACTGGCTGAACTGGATGAGAAAATTAGTGCCCTCAAACGAGCCCTGCT
CAGAAAGTCAAGAGAAGCAGACTCCATGGCCGCTCACCTTCCATGA

Translation (341 aa):
MAAAAELSSSSGSERSLEQCSSPLLTREVLCEVFRSLHTLTRQLNLRDDVVKITIDWNRLQSLSASQPAL
LLTALEQHVLYLQPFLAKLQSLMKENSTATEIRQTEAETKSELRAIHPTEDLQDEGKPKDCDVGDVKKTQ
NLFDPEVVQIKAGKAEIDRRISAFIERKQAEINENNVREFCNVIDCNQENSCARTDAVFTPYPGFKSHVK
VSRVVNTYGPQTRPEGIAGSGHKPTGMLRDCGNQAVEERLQNIEAHLRLQTGGPVPRDIYQRIKKLEDKI
LELEGISPEYFQSVNFSGKRRKVQPPQQNYSLAELDEKISALKRALLRKSREADSMAAHLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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